1Q0W
Solution structure of Vps27 amino-terminal UIM-ubiquitin complex
Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1q0wa_ | Peptides | Ubiquitin interacting motif (UIM) | Ubiquitin interacting motif (UIM) | Ubiquitin interacting motif (UIM) | Vacuolar protein sorting-associated protein vps27p | ( ) [TaxId: ], (Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ) [TaxId: 559292 ], | SCOPe (2.08) |
B | d1q0wb_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Ubiquitin | baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02809 | Ubiquitin interaction motif (UIM) | Ubiquitin interaction motif | - | Motif | |
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002014 | VHS domain | Domain | |
IPR008942 | ENTH/VHS | Homologous Superfamily | |
IPR017455 | Zinc finger, FYVE-related | Domain | |
IPR000306 | FYVE zinc finger | Domain | |
IPR011011 | Zinc finger, FYVE/PHD-type | Homologous Superfamily | |
IPR017073 | Hepatocyte growth factor-regulated tyrosine kinase substrate/VPS27 | Family | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR003903 | Ubiquitin interacting motif | Conserved Site | |
IPR049425 | Vacuolar protein sorting-associated protein 27, GAT-like domain | Domain | |
IPR019956 | Ubiquitin domain | Domain | |
IPR019954 | Ubiquitin conserved site | Conserved Site | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR000626 | Ubiquitin-like domain | Domain |