1PJM

Mouse Importin alpha-bipartite NLS from human retinoblastoma protein Complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1pjmb_	All alpha proteins	alpha-alpha superhelix	ARM repeat	Armadillo repeat	Importin alpha	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	ARM repeat-like	8039556	3000116	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Arm	e1pjmB1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Arm	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.25.10.10	Mainly Alpha	Alpha Horseshoe	Leucine-rich Repeat Variant	Leucine-rich Repeat Variant	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF08934	Rb C-terminal domain (Rb_C)	Rb C-terminal domain	The Rb C-terminal domain is required for high-affinity binding to E2F-DP complexes and for maximal repression of E2F-responsive promoters, thereby acting as a growth suppressor by blocking the G1-S transition of the cell cycle. This domain has a stra ...	The Rb C-terminal domain is required for high-affinity binding to E2F-DP complexes and for maximal repression of E2F-responsive promoters, thereby acting as a growth suppressor by blocking the G1-S transition of the cell cycle. This domain has a strand-loop-helix structure, which directly interacts with both E2F1 and DP1, followed by a tail segment that lacks regular secondary structure [1].	Domain
B	PF00514	Armadillo/beta-catenin-like repeat (Arm)	Armadillo/beta-catenin-like repeat	-	Repeat
B	PF01749	Importin beta binding domain (IBB)	Importin beta binding domain	-	Repeat
B	PF16186	Atypical Arm repeat (Arm_3)	Atypical Arm repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Retinoblastoma-associated protein	phosphoprotein binding protein binding binding molecular adaptor activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding identical protein binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding phosphoprotein binding protein binding binding molecular adaptor activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding identical protein binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding kinase binding transcription corepressor activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity importin-alpha family protein binding disordered domain specific binding protein domain specific binding	developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation muscle structure development cellular developmental process cell differentiation anatomical structure development cellular process myoblast differentiation developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation muscle structure development cellular developmental process cell differentiation anatomical structure development cellular process myoblast differentiation cell division multicellular organismal process regulation of cellular process regulation of developmental process negative regulation of biological process cell development regulation of neurogenesis regulation of cell differentiation regulation of gliogenesis negative regulation of glial cell proliferation regulation of cell development regulation of nervous system development neurogenesis multicellular organism development negative regulation of neurogenesis regulation of glial cell proliferation gliogenesis negative regulation of cellular process regulation of multicellular organismal process negative regulation of nervous system development negative regulation of cell differentiation system development regulation of multicellular organismal development regulation of biological process negative regulation of cell population proliferation cell population proliferation negative regulation of developmental process biological regulation nervous system development negative regulation of gliogenesis negative regulation of cell development regulation of cell population proliferation glial cell proliferation negative regulation of multicellular organismal process protein localization localization cellular localization protein localization to chromosome, centromeric region protein localization to chromosome protein localization to organelle cellular macromolecule localization macromolecule localization apoptotic process cell death programmed cell death glial cell apoptotic process negative regulation of cell cycle cell cycle regulation of cell cycle establishment of organelle localization attachment of spindle microtubules to kinetochore sister chromatid biorientation chromosome organization sister chromatid segregation establishment of localization cellular component organization metaphase chromosome alignment organelle organization chromosome localization organelle localization establishment of localization in cell nuclear chromosome segregation cellular component organization or biogenesis establishment of chromosome localization chromosome segregation cell cycle process regulation of growth regulation of cellular component organization growth negative regulation of cell growth regulation of cell growth cell growth negative regulation of growth regulation of molecular function positive regulation of molecular function regulation of DNA binding regulation of binding positive regulation of transcription regulatory region DNA binding regulation of transcription regulatory region DNA binding positive regulation of binding positive regulation of DNA binding homeostatic process hemopoiesis erythrocyte differentiation multicellular organismal-level homeostasis myeloid cell differentiation immune system process homeostasis of number of cells myeloid cell homeostasis enucleate erythrocyte differentiation erythrocyte homeostasis mitotic sister chromatid cohesion sister chromatid cohesion maintenance of sister chromatid cohesion maintenance of mitotic sister chromatid cohesion negative regulation of hepatocyte apoptotic process regulation of epithelial cell apoptotic process negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death epithelial cell apoptotic process negative regulation of apoptotic process regulation of hepatocyte apoptotic process negative regulation of epithelial cell apoptotic process hepatocyte apoptotic process regulation of centromere complex assembly protein-containing complex organization protein-DNA complex assembly regulation of chromosome organization regulation of cellular component biogenesis regulation of organelle organization cellular component biogenesis protein-DNA complex organization regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly centromere complex assembly skeletal muscle cell differentiation skeletal muscle tissue development animal organ development tissue development skeletal muscle organ development muscle tissue development muscle organ development regulation of catalytic activity negative regulation of nitrogen compound metabolic process negative regulation of catalytic activity regulation of transferase activity negative regulation of cellular metabolic process regulation of primary metabolic process regulation of nitrogen compound metabolic process negative regulation of kinase activity negative regulation of transferase activity regulation of phosphate metabolic process phosphate-containing compound metabolic process negative regulation of protein modification process phosphorus metabolic process protein modification process negative regulation of protein metabolic process protein phosphorylation phosphorylation cellular metabolic process regulation of protein metabolic process negative regulation of metabolic process regulation of cellular metabolic process primary metabolic process regulation of kinase activity negative regulation of protein phosphorylation macromolecule modification regulation of phosphorus metabolic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of protein modification process regulation of protein phosphorylation negative regulation of phosphate metabolic process organic substance metabolic process nitrogen compound metabolic process protein metabolic process negative regulation of macromolecule metabolic process organonitrogen compound metabolic process negative regulation of molecular function negative regulation of protein kinase activity regulation of protein kinase activity regulation of macromolecule metabolic process negative regulation of phosphorus metabolic process regulation of phosphorylation negative regulation of phosphorylation cellular biosynthetic process RNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process heterocycle metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process cellular nitrogen compound metabolic process nucleobase-containing compound biosynthetic process heterocycle biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process aromatic compound biosynthetic process organic cyclic compound biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription cellular aromatic compound metabolic process mitotic cell cycle process cell cycle phase transition G1/S transition of mitotic cell cycle cell cycle G1/S phase transition mitotic cell cycle mitotic cell cycle phase transition myeloid leukocyte differentiation regulation of leukocyte differentiation positive regulation of biological process mononuclear cell differentiation positive regulation of developmental process positive regulation of cell differentiation positive regulation of hemopoiesis regulation of immune system process regulation of macrophage differentiation positive regulation of immune system process positive regulation of cellular process regulation of myeloid cell differentiation positive regulation of cell development macrophage differentiation regulation of myeloid leukocyte differentiation positive regulation of myeloid leukocyte differentiation positive regulation of macrophage differentiation positive regulation of myeloid cell differentiation regulation of hemopoiesis positive regulation of multicellular organismal process positive regulation of leukocyte differentiation leukocyte differentiation cellular response to stimulus cellular response to chemical stimulus response to stimulus response to chemical cellular response to xenobiotic stimulus response to xenobiotic stimulus striated muscle cell differentiation muscle cell differentiation connective tissue development skeletal system development chondrocyte differentiation cartilage development negative regulation of RNA biosynthetic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of cellular biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process negative regulation of biosynthetic process regulation of epithelial cell proliferation epithelial cell proliferation negative regulation of epithelial cell proliferation positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of macromolecule metabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of cellular metabolic process positive regulation of biosynthetic process positive regulation of nitrogen compound metabolic process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process plasma membrane bounded cell projection organization cell projection organization neuron projection development generation of neurons neuron differentiation neuron development cell surface receptor signaling pathway signaling smoothened signaling pathway cell communication signal transduction negative regulation of DNA-binding transcription factor activity regulation of DNA-binding transcription factor activity regulation of mitotic cell cycle positive regulation of organelle organization regulation of cell cycle phase transition regulation of mitotic nuclear division positive regulation of mitotic nuclear division positive regulation of mitotic metaphase/anaphase transition positive regulation of mitotic cell cycle phase transition mitotic sister chromatid separation regulation of cell cycle process positive regulation of nuclear division regulation of mitotic cell cycle phase transition regulation of chromosome separation regulation of chromosome segregation regulation of metaphase/anaphase transition of cell cycle regulation of mitotic sister chromatid separation positive regulation of cellular component organization regulation of mitotic metaphase/anaphase transition positive regulation of metaphase/anaphase transition of cell cycle mitotic sister chromatid segregation positive regulation of cell cycle process positive regulation of mitotic cell cycle mitotic nuclear division organelle fission positive regulation of cell cycle nuclear division chromosome separation regulation of sister chromatid segregation positive regulation of cell cycle phase transition positive regulation of mitotic sister chromatid separation regulation of nuclear division metaphase/anaphase transition of mitotic cell cycle positive regulation of chromosome separation metaphase/anaphase transition of cell cycle developmental maturation anatomical structure maturation neuron maturation cell maturation digestive system development tube development digestive tract development regulation of defense response regulation of response to external stimulus negative regulation of inflammatory response defense response negative regulation of response to stimulus response to external stimulus regulation of inflammatory response regulation of response to stimulus response to stress negative regulation of response to external stimulus regulation of response to stress negative regulation of defense response inflammatory response negative regulation of signaling regulation of signal transduction negative regulation of cell communication negative regulation of smoothened signaling pathway regulation of smoothened signaling pathway regulation of signaling negative regulation of signal transduction regulation of cell communication small GTPase-mediated signal transduction Ras protein signal transduction intracellular signal transduction intracellular signaling cassette heart development heart valve development aortic valve development circulatory system development anatomical structure morphogenesis heart valve morphogenesis semi-lunar valve development aortic valve morphogenesis cell morphogenesis involved in neuron differentiation cell morphogenesis negative regulation of apoptotic signaling pathway apoptotic signaling pathway regulation of apoptotic signaling pathway neuron apoptotic process regulation of cell cycle G1/S phase transition negative regulation of mitotic cell cycle negative regulation of cell cycle phase transition negative regulation of G1/S transition of mitotic cell cycle negative regulation of mitotic cell cycle phase transition negative regulation of cell cycle G1/S phase transition negative regulation of cell cycle process regulation of G1/S transition of mitotic cell cycle regulation of protein serine/threonine kinase activity negative regulation of protein serine/threonine kinase activity chromatin organization chromatin remodeling heterochromatin formation epigenetic regulation of gene expression negative regulation of gene expression negative regulation of gene expression, epigenetic anatomical structure homeostasis tissue homeostasis negative regulation of tau-protein kinase activity regulation of tau-protein kinase activity cellular response to nitrogen compound response to organic substance response to endogenous stimulus response to organonitrogen compound response to peptide hormone response to oxygen-containing compound cellular response to peptide hormone stimulus response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to organonitrogen compound response to hormone response to insulin cellular response to organic substance cellular response to insulin stimulus cellular response to hormone stimulus regulation of myofibroblast differentiation myofibroblast differentiation negative regulation of myofibroblast differentiation negative regulation of cold-induced thermogenesis adaptive thermogenesis regulation of cold-induced thermogenesis cold-induced thermogenesis temperature homeostasis regulation of lipid kinase activity positive regulation of collagen fibril organization positive regulation of extracellular matrix organization collagen fibril organization extracellular matrix organization positive regulation of supramolecular fiber organization regulation of supramolecular fiber organization supramolecular fiber organization regulation of extracellular matrix organization regulation of collagen fibril organization extracellular structure organization external encapsulating structure organization	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle SWI/SNF complex ATPase complex protein-containing complex catalytic complex protein-DNA complex nucleus nuclear protein-containing complex chromatin chromosome intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle SWI/SNF complex ATPase complex protein-containing complex catalytic complex protein-DNA complex nucleus nuclear protein-containing complex chromatin chromosome intracellular membrane-bounded organelle intracellular organelle organelle intracellular non-membrane-bounded organelle SWI/SNF superfamily-type complex non-membrane-bounded organelle cytoskeleton spindle microtubule cytoskeleton chromatin silencing complex chromatin lock complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen RNA polymerase II transcription regulator complex transcription regulator complex Rb-E2F complex nuclear body PML body
B	Importin alpha-2 subunit	histone deacetylase binding protein binding binding enzyme binding nuclear localization sequence binding signal sequence binding peptide binding transcription factor binding DNA-binding transcription factor binding nuclear import signal receptor activity nucleocytoplasmic carrier activity molecular carrier activity	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cell-cell signaling postsynaptic signal transduction cell communication synaptic signaling cellular process postsynapse to nucleus signaling pathway signal transduction protein localization cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cell-cell signaling postsynaptic signal transduction cell communication synaptic signaling cellular process postsynapse to nucleus signaling pathway signal transduction protein localization establishment of protein localization cellular localization nitrogen compound transport nucleocytoplasmic transport transport nuclear transport organic substance transport intracellular transport protein localization to nucleus establishment of localization localization import into nucleus establishment of protein localization to organelle protein transport cellular macromolecule localization macromolecule localization protein localization to organelle establishment of localization in cell protein import into nucleus intracellular protein transport regulation of viral process regulation of viral life cycle positive regulation of viral life cycle positive regulation of viral process viral process positive regulation of biological process viral life cycle NLS-bearing protein import into nucleus viral penetration into host nucleus entry of viral genome into host nucleus through nuclear pore complex via importin intracellular transport of virus transport of virus	intracellular anatomical structure cytoplasmic ribonucleoprotein granule cellular anatomical entity ribonucleoprotein granule intracellular organelle organelle intracellular non-membrane-bounded organelle cytoplasm supramolecular complex non-membrane-bounded organelle cytoplasmic stress granule protein-containing complex nucleocytoplasmic transport complex NLS-dependent protein nuclear import complex intracellular anatomical structure cytoplasmic ribonucleoprotein granule cellular anatomical entity ribonucleoprotein granule intracellular organelle organelle intracellular non-membrane-bounded organelle cytoplasm supramolecular complex non-membrane-bounded organelle cytoplasmic stress granule protein-containing complex nucleocytoplasmic transport complex NLS-dependent protein nuclear import complex membrane-bounded organelle nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system organelle envelope nuclear envelope organelle membrane cytosol membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen synapse cell junction glutamatergic synapse host cellular component host cell postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization asymmetric synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR024599	Retinoblastoma-associated protein, N-terminal	Domain
A	IPR015030	Retinoblastoma-associated protein, C-terminal	Domain
A	IPR002720	Retinoblastoma-associated protein, A-box	Domain
A	IPR028309	Retinoblastoma protein family	Family
A	IPR002719	Retinoblastoma-associated protein, B-box	Domain
A	IPR036915	Cyclin-like superfamily	Homologous Superfamily
A	IPR013763	Cyclin-like domain	Domain
B	IPR016024	Armadillo-type fold	Homologous Superfamily
B	IPR000225	Armadillo	Repeat
B	IPR011989	Armadillo-like helical	Homologous Superfamily
B	IPR024931	Importin subunit alpha	Family
B	IPR036975	Importin-alpha, importin-beta-binding domain superfamily	Homologous Superfamily
B	IPR002652	Importin-alpha, importin-beta-binding domain	Domain
B	IPR032413	Atypical Arm repeat	Repeat

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P06400	urinary bladder cancer small cell lung carcinoma osteosarcoma retinoblastoma chromosome 13q14 deletion syndrome esophageal squamous cell carcinoma non-small cell lung carcinoma hereditary retinoblastoma adrenal cortex carcinoma skin basal cell carcinoma Stevens-Johnson syndrome gastrointestinal stromal tumor prostate cancer Liver Neoplasms, Experimental Sezary syndrome urinary bladder cancer small cell lung carcinoma osteosarcoma retinoblastoma chromosome 13q14 deletion syndrome esophageal squamous cell carcinoma non-small cell lung carcinoma hereditary retinoblastoma adrenal cortex carcinoma skin basal cell carcinoma Stevens-Johnson syndrome gastrointestinal stromal tumor prostate cancer Liver Neoplasms, Experimental Sezary syndrome brain ischemia breast carcinoma small cell carcinoma sarcomatoid carcinoma bone osteosarcoma breast cancer carcinoma childhood acute lymphoblastic leukemia undifferentiated carcinoma urinary bladder neoplasm dermatomyositis myopathy oligodendroglioma hypotrichosis 8 adrenal gland cancer large cell medulloblastoma rheumatoid arthritis bladder benign neoplasm malignant mesothelioma skin pigmented basal cell carcinoma malignant pancreatic neoplasm mammary neoplasms, animal cholangiocarcinoma medulloblastoma eye disease glioblastoma adrenal carcinoma IgA glomerulonephritis sarcoma astrocytic tumor bladder carcinoma in situ lung cancer Sjogren syndrome breast adenocarcinoma cancer toxic epidermal necrolysis urinary bladder carcinoma hepatocellular carcinoma pancreatic neoplasm primitive neuroectodermal tumor juvenile dermatomyositis atypical teratoid rhabdoid tumor malignant ependymoma

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.