1H4R

Crystal Structure of the FERM domain of Merlin, the Neurofibromatosis 2 Tumor Suppressor Protein.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1h4ra1	All alpha proteins	Acyl-CoA binding protein-like	Second domain of FERM	Second domain of FERM	Merlin	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1h4ra2	All beta proteins	PH domain-like barrel	PH domain-like	Third domain of FERM	Merlin	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1h4ra3	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	Ubiquitin-like	First domain of FERM	Merlin	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1h4rb1	All alpha proteins	Acyl-CoA binding protein-like	Second domain of FERM	Second domain of FERM	Merlin	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1h4rb2	All beta proteins	PH domain-like barrel	PH domain-like	Third domain of FERM	Merlin	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1h4rb3	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	Ubiquitin-like	First domain of FERM	Merlin	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	FERM domain-like	8023887	4000747	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	FERM central domain-like	8036267	3001227	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PH domain-like	8036269	3000134	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ubiquitin-like	8036270	3000157	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	PH domain-like	8036269	3000134	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ubiquitin-like	8036270	3000157	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	FERM central domain-like	8036267	3001227	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	FERM_C	e1h4rA1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: FERM_C	ECOD (1.6)
A	FERM_M	e1h4rA2	A: alpha bundles	X: Acyl-CoA binding protein-like (From Topology)	H: Acyl-CoA binding protein-like (From Topology)	T: Acyl-CoA binding protein-like	F: FERM_M	ECOD (1.6)
A	FERM_N	e1h4rA3	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: FERM_N	ECOD (1.6)
B	FERM_C	e1h4rB1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: FERM_C	ECOD (1.6)
B	FERM_M	e1h4rB2	A: alpha bundles	X: Acyl-CoA binding protein-like (From Topology)	H: Acyl-CoA binding protein-like (From Topology)	T: Acyl-CoA binding protein-like	F: FERM_M	ECOD (1.6)
B	FERM_N	e1h4rB3	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: FERM_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
A	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
A	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
B	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
B	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
B	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF09379	FERM N-terminal domain (FERM_N)	FERM N-terminal domain	This domain is the N-terminal ubiquitin-like structural domain of the FERM domain.	Domain
A, B	PF09380	FERM C-terminal PH-like domain (FERM_C)	FERM C-terminal PH-like domain	-	Domain
A, B	PF00373	FERM central domain (FERM_M)	FERM central domain	This domain is the central structural domain of the FERM domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	MERLIN	cell adhesion molecule binding protein-containing complex binding protein binding binding integrin binding signaling receptor binding cytoskeletal protein binding actin binding	developmental process multicellular organismal process epithelium development cellular developmental process sensory organ development eye development animal organ development visual system development tissue development epithelial cell differentiation multicellular organism development cell differentiation anatomical structure development camera-type eye development lens fiber cell differentiation developmental process multicellular organismal process epithelium development cellular developmental process sensory organ development eye development animal organ development visual system development tissue development epithelial cell differentiation multicellular organism development cell differentiation anatomical structure development camera-type eye development lens fiber cell differentiation cellular process sensory system development lens development in camera-type eye system development regulation of biological process cell population proliferation regulation of cellular process regulation of cell population proliferation biological regulation neural precursor cell proliferation regulation of neural precursor cell proliferation regulation of cellular component organization organelle assembly regulation of cellular component biogenesis regulation of organelle organization cellular component biogenesis cellular component organization organelle organization cellular component assembly regulation of organelle assembly cellular component organization or biogenesis regulation of apoptotic process apoptotic process regulation of programmed cell death cell death programmed cell death actin cytoskeleton organization actin filament-based process cytoskeleton organization regulation of developmental process positive regulation of biological process regulation of cell differentiation positive regulation of developmental process positive regulation of cell differentiation positive regulation of cellular process cellular response to stimulus hippo signaling regulation of signaling response to stimulus signaling regulation of signal transduction intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus regulation of cell communication regulation of hippo signaling signal transduction regulation of cell adhesion negative regulation of biological process negative regulation of cell adhesion cell adhesion cell-cell adhesion negative regulation of cell-cell adhesion negative regulation of cellular process regulation of cell-cell adhesion protein localization regulation of localization cellular localization regulation of protein localization regulation of protein localization to nucleus protein localization to nucleus localization regulation of cellular localization cellular macromolecule localization macromolecule localization protein localization to organelle intracellular signaling cassette MAPK cascade Schwann cell proliferation nervous system development neurogenesis gliogenesis glial cell proliferation regulation of protein stability regulation of biological quality negative regulation of cell population proliferation osteoblast proliferation negative regulation of osteoblast proliferation regulation of osteoblast proliferation negative regulation of locomotion regulation of cell motility regulation of locomotion regulation of cell migration negative regulation of cell motility cell migration cell motility negative regulation of cell migration locomotion formation of primary germ layer mesoderm morphogenesis embryonic morphogenesis embryo development gastrulation tissue morphogenesis anatomical structure morphogenesis anatomical structure formation involved in morphogenesis mesoderm formation mesoderm development head development forebrain development brain development pallium development central nervous system development telencephalon development hippocampus development limbic system development odontogenesis of dentin-containing tooth odontogenesis animal organ morphogenesis cell development regulation of neurogenesis regulation of gliogenesis regulation of cell development regulation of nervous system development regulation of multicellular organismal process regulation of multicellular organismal development positive regulation of protein localization to early endosome protein localization to endosome protein localization to early endosome regulation of protein localization to endosome positive regulation of protein localization positive regulation of protein localization to endosome regulation of protein localization to early endosome negative regulation of glial cell proliferation negative regulation of Schwann cell proliferation negative regulation of neurogenesis regulation of glial cell proliferation negative regulation of nervous system development negative regulation of cell differentiation regulation of Schwann cell proliferation negative regulation of developmental process negative regulation of gliogenesis negative regulation of cell development negative regulation of multicellular organismal process regulation of cell shape cell morphogenesis regulation of cell morphogenesis regulation of anatomical structure morphogenesis cell surface receptor signaling pathway via STAT negative regulation of signaling negative regulation of cell communication regulation of receptor signaling pathway via JAK-STAT negative regulation of receptor signaling pathway via JAK-STAT cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of signal transduction negative regulation of receptor signaling pathway via STAT regulation of receptor signaling pathway via STAT cell surface receptor signaling pathway via JAK-STAT regulation of stem cell proliferation stem cell proliferation negative regulation of intracellular signal transduction regulation of MAPK cascade negative regulation of MAPK cascade negative regulation of cellular metabolic process regulation of primary metabolic process regulation of phosphate metabolic process peptidyl-amino acid modification phosphate-containing compound metabolic process negative regulation of protein modification process protein modification process phosphorus metabolic process negative regulation of protein metabolic process tyrosine phosphorylation of STAT protein protein phosphorylation phosphorylation cellular metabolic process regulation of protein metabolic process negative regulation of metabolic process primary metabolic process regulation of cellular metabolic process negative regulation of protein phosphorylation macromolecule modification metabolic process regulation of phosphorus metabolic process macromolecule metabolic process regulation of metabolic process regulation of protein modification process regulation of protein phosphorylation negative regulation of phosphate metabolic process peptidyl-tyrosine modification organic substance metabolic process protein metabolic process negative regulation of macromolecule metabolic process negative regulation of peptidyl-tyrosine phosphorylation organonitrogen compound metabolic process regulation of tyrosine phosphorylation of STAT protein regulation of peptidyl-tyrosine phosphorylation regulation of macromolecule metabolic process negative regulation of tyrosine phosphorylation of STAT protein negative regulation of phosphorus metabolic process regulation of phosphorylation negative regulation of phosphorylation peptidyl-tyrosine phosphorylation regulation of cell-substrate adhesion cell-substrate adhesion negative regulation of cell-matrix adhesion cell-matrix adhesion regulation of cell-matrix adhesion negative regulation of cell-substrate adhesion positive regulation of early endosome to late endosome transport transport vesicle-mediated transport establishment of localization in cell positive regulation of intracellular transport regulation of intracellular transport regulation of transport intracellular transport regulation of vesicle-mediated transport establishment of localization endosomal transport vesicle-mediated transport between endosomal compartments regulation of early endosome to late endosome transport early endosome to late endosome transport positive regulation of transport cell cycle regulation of cell cycle positive regulation of organelle organization regulation of cytoskeleton organization regulation of actin filament-based process positive regulation of cellular component organization regulation of actin filament bundle assembly positive regulation of actin filament bundle assembly actin filament bundle organization positive regulation of stress fiber assembly stress fiber assembly regulation of actin filament organization actomyosin structure organization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization actin filament organization positive regulation of supramolecular fiber organization regulation of stress fiber assembly contractile actin filament bundle assembly regulation of actomyosin structure organization actin filament bundle assembly regulation of actin cytoskeleton organization regulation of supramolecular fiber organization supramolecular fiber organization cell junction organization cell-cell junction organization ectoderm development	cell projection cell leading edge cellular anatomical entity plasma membrane bounded cell projection lamellipodium membrane apical part of cell intracellular anatomical structure cytoplasm cytosol neuron projection cell-cell junction adherens junction anchoring junction cell projection cell leading edge cellular anatomical entity plasma membrane bounded cell projection lamellipodium membrane apical part of cell intracellular anatomical structure cytoplasm cytosol neuron projection cell-cell junction adherens junction anchoring junction cell junction intracellular organelle cytoskeleton organelle intracellular non-membrane-bounded organelle non-membrane-bounded organelle perinuclear region of cytoplasm cell body actin-based cell projection filopodium membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle nucleolus intracellular organelle lumen organelle lumen nuclear lumen ruffle plasma membrane leading edge membrane cell periphery ruffle membrane plasma membrane region cell projection membrane cell division site cleavage furrow early endosome endosome intracellular vesicle endomembrane system cytoplasmic vesicle vesicle cell cortex cortical cytoskeleton actin cytoskeleton cortical actin cytoskeleton filopodium membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR000299	FERM domain	Domain
A, B	IPR019748	FERM central domain	Domain
A, B	IPR018980	FERM, C-terminal PH-like domain	Domain
A, B	IPR000798	Ezrin/radixin/moesin-like	Family
A, B	IPR008954	Moesin tail domain superfamily	Homologous Superfamily
A, B	IPR035963	FERM superfamily, second domain	Homologous Superfamily
A, B	IPR011259	Ezrin/radixin/moesin, C-terminal	Domain
A, B	IPR019747	FERM conserved site	Conserved Site
A, B	IPR018979	FERM, N-terminal	Domain
A, B	IPR014352	FERM/acyl-CoA-binding protein superfamily	Homologous Superfamily
A, B	IPR041789	ERM family, FERM domain C-lobe	Domain
A, B	IPR011993	PH-like domain superfamily	Homologous Superfamily
A, B	IPR046810	Ezrin/radixin/moesin, alpha-helical domain	Domain
A, B	IPR019749	Band 4.1 domain	Domain
A, B	IPR011174	Ezrin/radixin/moesin	Family
A, B	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P35240	meningioma malignant mesothelioma neurofibromatosis type 2 familial meningioma neurofibromatosis type 3 renal cell carcinoma secretory meningioma neurofibromatosis psammomatous meningioma acoustic neuroma benign meningioma meningothelial meningioma chromophobe renal cell carcinoma collecting duct carcinoma papillary renal cell carcinoma meningioma malignant mesothelioma neurofibromatosis type 2 familial meningioma neurofibromatosis type 3 renal cell carcinoma secretory meningioma neurofibromatosis psammomatous meningioma acoustic neuroma benign meningioma meningothelial meningioma chromophobe renal cell carcinoma collecting duct carcinoma papillary renal cell carcinoma intraorbital meningioma sarcomatoid renal cell carcinoma schwannomatosis 1 spinal meningioma clear cell meningioma parasagittal meningioma intraventricular meningioma renal carcinoma schwannoma angiomatous meningioma transitional meningioma microcystic meningioma cerebral convexity meningioma olfactory groove meningioma fibrous meningioma Intracranial Meningioma pleural cancer kidney neoplasm lymphoplasmacyte-rich meningioma melanoma cancer neoplasm with perivascular epithelioid cell differentiation osteosarcoma pleural neoplasm large cell medulloblastoma psoriasis benign mesothelioma mesothelioma cataract neurofibroma ovarian cancer lung cancer breast carcinoma clear cell renal carcinoma papillary meningioma

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.