1FSK


COMPLEX FORMATION BETWEEN A FAB FRAGMENT OF A MONOCLONAL IGG ANTIBODY AND THE MAJOR ALLERGEN FROM BIRCH POLLEN BET V 1


Domain Annotation: SCOP Classification SCOP Database (version: 2.0) Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpecies
Ad1fska_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like Major tree pollen allergen European white birch (Betula pendula ) [TaxId: 3505 ]
Dd1fskd_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like Major tree pollen allergen European white birch (Betula pendula ) [TaxId: 3505 ]
Gd1fskg_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like Major tree pollen allergen European white birch (Betula pendula ) [TaxId: 3505 ]
Jd1fskj_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like Major tree pollen allergen European white birch (Betula pendula ) [TaxId: 3505 ]
Bd1fskb1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL-kappa house mouse (Mus musculus ) [TaxId: 10090 ]
Bd1fskb2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Immunoglobulin light chain kappa constant domain, CL-kappa house mouse (Mus musculus ) [TaxId: 10090 ]
Ed1fske1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL-kappa house mouse (Mus musculus ) [TaxId: 10090 ]
Ed1fske2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Immunoglobulin light chain kappa constant domain, CL-kappa house mouse (Mus musculus ) [TaxId: 10090 ]
Hd1fskh1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL-kappa house mouse (Mus musculus ) [TaxId: 10090 ]
Hd1fskh2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Immunoglobulin light chain kappa constant domain, CL-kappa house mouse (Mus musculus ) [TaxId: 10090 ]
Kd1fskk1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL-kappa house mouse (Mus musculus ) [TaxId: 10090 ]
Kd1fskk2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Immunoglobulin light chain kappa constant domain, CL-kappa house mouse (Mus musculus ) [TaxId: 10090 ]
Cd1fskc1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH house mouse (Mus musculus ) [TaxId: 10090 ]
Cd1fskc2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma house mouse (Mus musculus ) [TaxId: 10090 ]
Cd1fskc3 Artifacts Tags Tags Tags N-terminal Tags house mouse (Mus musculus ) [TaxId: 10090 ]
Fd1fskf1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH house mouse (Mus musculus ) [TaxId: 10090 ]
Fd1fskf2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma house mouse (Mus musculus ) [TaxId: 10090 ]
Fd1fskf3 Artifacts Tags Tags Tags N-terminal Tags house mouse (Mus musculus ) [TaxId: 10090 ]
Id1fski1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH house mouse (Mus musculus ) [TaxId: 10090 ]
Id1fski2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma house mouse (Mus musculus ) [TaxId: 10090 ]
Id1fski3 Artifacts Tags Tags Tags N-terminal Tags house mouse (Mus musculus ) [TaxId: 10090 ]
Ld1fskl1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH house mouse (Mus musculus ) [TaxId: 10090 ]
Ld1fskl2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma house mouse (Mus musculus ) [TaxId: 10090 ]
Ld1fskl3 Artifacts Tags Tags Tags N-terminal Tags house mouse (Mus musculus ) [TaxId: 10090 ]

Domain Annotation: CATH CATH Database (version 4.2.0) Homepage

ChainDomainClassArchitectureTopologyHomology
A3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4
D3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4
G3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4
J3.30.530.20 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate Chain A, domain 4
B2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
B2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
E2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
E2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
H2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
H2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
K2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
K2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
C2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
C2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
F2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
F2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
I2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
I2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
L2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
L2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins

Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
A, D, G, JPF00407Pathogenesis-related protein Bet v 1 family (Bet_v_1)Pathogenesis-related protein Bet v 1 familyThis family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants [1]. In recent ye ...This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants [1]. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10 [2]: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1 (Swiss:Q8H1L1), an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones [3]. - (S)-Norcoclaurine synthases are enzymes catalysing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine [4]. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber [5]. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens (Swiss:Q9AXI3).
Domain
B, E, H, KPF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domain- Domain

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, D, G, JMAJOR POLLEN ALLERGEN BET V 1-A
B, E, H, KIMMUNOGLOBULIN KAPPA LIGHT CHAIN
C, F, I, LANTIBODY HEAVY CHAIN FABnone none none