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Crystal structure of Helicobacter pylori urease in complex with acetohydroxamic acid External Resource: Annotation Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage Chains Domain Info Class Fold Superfamily Family Domain Species Provenance Source (Version) A d1e9ya1 All beta proteins beta-clip Urease, beta-subunit Urease, beta-subunit Urease, beta-subunit (Helicobacter pylori ) [TaxId: 210 ], SCOPe (2.08) A d1e9ya2 Alpha and beta proteins (a+b) Urease, gamma-subunit Urease, gamma-subunit Urease, gamma-subunit Urease, gamma-subunit (Helicobacter pylori ) [TaxId: 210 ], SCOPe (2.08) B d1e9yb1 All beta proteins Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases alpha-Subunit of urease alpha-Subunit of urease (Helicobacter pylori ) [TaxId: 210 ], SCOPe (2.08) B d1e9yb2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Metallo-dependent hydrolases alpha-subunit of urease, catalytic domain alpha-subunit of urease, catalytic domain (Helicobacter pylori ) [TaxId: 210 ], SCOPe (2.08)
Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) A SCOP2 Family Urease gamma-subunit 8023198 4000909 SCOP2 (2022-06-29) A SCOP2 Family Urease beta-subunit 8023195 4002967 SCOP2 (2022-06-29) A SCOP2 Superfamily Urease gamma-subunit 8035578 3001945 SCOP2 (2022-06-29) A SCOP2 Superfamily Urease beta-subunit 8035575 3001949 SCOP2 (2022-06-29) B SCOP2 Family alpha-Subunit of urease 8023200 4003022 SCOP2 (2022-06-29) B SCOP2 Family alpha-subunit of urease catalytic domain 8023204 4003208 SCOP2 (2022-06-29) B SCOP2 Superfamily Composite domain of metallo-dependent hydrolases 8035580 3000176 SCOP2 (2022-06-29) B SCOP2 Superfamily Metallo-dependent hydrolases 8035584 3000428 SCOP2 (2022-06-29)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) A Urease_beta e1e9yA1 A: beta sandwiches X: Immunoglobulin-like beta-sandwich H: Urease, beta-subunit (From Topology) T: Urease, beta-subunit F: Urease_beta ECOD (1.6) A Urease_gamma e1e9yA2 A: a+b two layers X: Urease, gamma-subunit (From Topology) H: Urease, gamma-subunit (From Topology) T: Urease, gamma-subunit F: Urease_gamma ECOD (1.6) B Urease_alpha e1e9yB1 A: beta sandwiches X: Composite domain of metallo-dependent hydrolases (From Topology) H: Composite domain of metallo-dependent hydrolases (From Topology) T: Composite domain of metallo-dependent hydrolases F: Urease_alpha ECOD (1.6) B Amidohydro_1_N e1e9yB2 A: a/b barrels X: TIM beta/alpha-barrel H: TIM barrels (From Topology) T: TIM barrels F: Amidohydro_1_N ECOD (1.6)
Chains Accession Name Description Comments Source PF00699 Urease beta subunit (Urease_beta) Urease beta subunit This subunit is known as alpha in Heliobacter. Domain PF00547 Urease, gamma subunit (Urease_gamma) Urease, gamma subunit Urease is a nickel-binding enzyme that catalyses the hydrolysis of urea to carbon dioxide and ammonia. Domain PF00449 Urease alpha-subunit, N-terminal domain (Urease_alpha) Urease alpha-subunit, N-terminal domain The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit. Domain PF01979 Amidohydrolase family (Amidohydro_1) Amidohydrolase family This family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisatio ... This family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source [2]. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyse the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit [3]. Dihydroorotases (EC:3.5.2.3) are also included [4-5]. Less Domain
Chains Polymer Molecular Function Biological Process Cellular Component UREASE SUBUNIT ALPHA UREASE SUBUNIT BETA