1CN3

INTERACTION OF POLYOMAVIRUS INTERNAL PROTEIN VP2 WITH MAJOR CAPSID PROTEIN VP1 AND IMPLICATIONS FOR PARTICIPATION OF VP2 IN VIRAL ENTRY


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyGroup I dsDNA viruses8040828 3000939 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyGroup I dsDNA viruses8040828 3000939 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyGroup I dsDNA viruses8040828 3000939 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyGroup I dsDNA viruses8040828 3000939 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyGroup I dsDNA viruses8040828 3000939 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00718e1cn3A1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00718ECOD (1.6)
DPF00718e1cn3D1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00718ECOD (1.6)
EPF00718e1cn3E1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00718ECOD (1.6)
BPF00718e1cn3B1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00718ECOD (1.6)
CPF00718e1cn3C1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00718ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.175.10 Mainly Beta Sandwich Polyomavirus Vp1 Chain ACATH (4.3.0)
D2.60.175.10 Mainly Beta Sandwich Polyomavirus Vp1 Chain ACATH (4.3.0)
E2.60.175.10 Mainly Beta Sandwich Polyomavirus Vp1 Chain ACATH (4.3.0)
B2.60.175.10 Mainly Beta Sandwich Polyomavirus Vp1 Chain ACATH (4.3.0)
C2.60.175.10 Mainly Beta Sandwich Polyomavirus Vp1 Chain ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00718Polyomavirus coat protein (Polyoma_coat)Polyomavirus coat protein- Domain
PF00761Polyomavirus coat protein (Polyoma_coat2)Polyomavirus coat protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
COAT PROTEIN VP1
FRAGMENT OF COAT PROTEIN VP2