6FDY

Unc-51-Like Kinase 3 (ULK3) In Complex With Bosutinib

• PDB DOI: https://doi.org/10.2210/pdb6FDY/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2017-12-27 Released: 2018-08-01 
• Deposition Author(s): Mathea, S., Salah, E., Moroglu, M., Scorah, A., Krojer, T., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Huber, K., Knapp, S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.239 
• R-Value Work: 0.205 
• R-Value Observed: 0.207 

Literature

Unc-51-Like Kinase 3 (ULK3) In Complex With Bosutinib

Mathea, S., Salah, E., Moroglu, M., Scorah, A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Huber, K., Knapp, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 33 kDa 
• Atom Count: 2,247 
• Modelled Residue Count: 262 
• Deposited Residue Count: 276 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine/threonine-protein kinase ULK3	A [auth U]	276	Homo sapiens	Mutation(s): 0  Gene Names: ULK3 EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q6PHR2 (Homo sapiens) Explore Q6PHR2  Go to UniProtKB:  Q6PHR2
PHAROS:  Q6PHR2 GTEx:  ENSG00000140474

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
DB8	B [auth U], C [auth U]	4-[(2,4-dichloro-5-methoxyphenyl)amino]-6-methoxy-7-[3-(4-methylpiperazin-1-yl)propoxy]quinoline-3-carbonitrile C26 H29 Cl2 N5 O3 UBPYILGKFZZVDX-UHFFFAOYSA-N

Binding Affinity Annotations
ID	Source	Binding Affinity
DB8	BindingDB:  6FDY	Kd: 460 (nM) from 1 assay(s)

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.239 
• R-Value Work: 0.205 
• R-Value Observed: 0.207 
• Space Group: C 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 92.375	α = 90
b = 169.406	β = 90
c = 45.919	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
xia2	data reduction
xia2	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2018-08-01 
Deposition Author(s): Mathea, S., Salah, E., Moroglu, M., Scorah, A., Krojer, T., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Huber, K., Knapp, S.

Revision History  

• Version 1.0: 2018-08-01
  Type: Initial release
  
• Version 1.1: 2024-01-17
  Changes: Data collection, Database references, Refinement description