6XF8

DLP 5 fold


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.50 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Assembly intermediates of orthoreovirus captured in the cell.

Sutton, G.Sun, D.Fu, X.Kotecha, A.Hecksel, C.W.Clare, D.K.Zhang, P.Stuart, D.I.Boyce, M.

(2020) Nat Commun 11: 4445-4445

  • DOI: https://doi.org/10.1038/s41467-020-18243-9
  • Primary Citation of Related Structures:  
    6XF7, 6XF8, 6ZTS, 6ZTY, 6ZTZ

  • PubMed Abstract: 

    Traditionally, molecular assembly pathways for viruses are inferred from high resolution structures of purified stable intermediates, low resolution images of cell sections and genetic approaches. Here, we directly visualise an unsuspected 'single shelled' intermediate for a mammalian orthoreovirus in cryo-preserved infected cells, by cryo-electron tomography of cellular lamellae. Particle classification and averaging yields structures to 5.6 Å resolution, sufficient to identify secondary structural elements and produce an atomic model of the intermediate, comprising 120 copies each of protein λ1 and σ2. This λ1 shell is 'collapsed' compared to the mature virions, with molecules pushed inwards at the icosahedral fivefolds by ~100 Å, reminiscent of the first assembly intermediate of certain prokaryotic dsRNA viruses. This supports the supposition that these viruses share a common ancestor, and suggests mechanisms for the assembly of viruses of the Reoviridae. Such methodology holds promise for dissecting the replication cycle of many viruses.


  • Organizational Affiliation

    Division of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, OX3 7BN, UK.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Outer capsid protein mu-1A [auth K],
E [auth F]
633Mammalian orthoreovirus 1 LangMutation(s): 0 
UniProt
Find proteins for P11077 (Reovirus type 1 (strain Lang))
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Go to UniProtKB:  P11077
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UniProt GroupP11077
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Outer capsid protein sigma-3B [auth I],
C [auth H],
D [auth G]
365Mammalian orthoreovirus 1 LangMutation(s): 0 
UniProt
Find proteins for P07939 (Reovirus type 1 (strain Lang))
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UniProt GroupP07939
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Inner capsid protein sigma-2F [auth E]417Mammalian orthoreovirus 1 LangMutation(s): 0 
UniProt
Find proteins for P11314 (Reovirus type 1 (strain Lang))
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UniProt GroupP11314
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Inner capsid protein lambda-1G [auth C],
H [auth B]
1,059Mammalian orthoreovirus 1 LangMutation(s): 0 
EC: 3.6.4.13
UniProt
Find proteins for Q9WAB2 (Reovirus type 1 (strain Lang))
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UniProt GroupQ9WAB2
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
mRNA (guanine-N(7)-)-methyltransferaseI [auth A]1,288Mammalian orthoreovirus 1 LangMutation(s): 0 
EC: 2.1.1.56 (PDB Primary Data), 2.7.7.50 (PDB Primary Data)
UniProt
Find proteins for Q91RA5 (Reovirus type 1 (strain Lang))
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UniProt GroupQ91RA5
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.50 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONemClarity

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United KingdomMR/N00065X/1
Wellcome TrustUnited Kingdom206422/Z/17/Z
National Institutes of Health/National Institute of Biomedical Imaging and Bioengineering (NIH/NIBIB)United StatesGM082251

Revision History  (Full details and data files)

  • Version 1.0: 2020-09-23
    Type: Initial release