6V04

DynU16 crystal structure, a putative protein in the dynemicin biosynthetic locus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.163 

wwPDB Validation   3D Report Full Report



Literature

DynU16 crystal structure, a putative protein in the dynemicin biosynthetic locus

Alvarado, S.K.Miller, M.D.Bhardwaj, M.Thorson, J.S.Van Lanen, S.G.Philips Jr., G.N.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Uncharacterized SRPBCC domain-containing proteinA283Micromonospora chersinaMutation(s): 0 
Gene Names: GA0070603_4194
Find proteins for B2BM46 (Micromonospora chersina)
Explore B2BM46 
Go to UniProtKB:  B2BM46
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
MG
Query on MG

Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
NA
Query on NA

Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.163 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 73.171α = 90
b = 73.171β = 90
c = 123.944γ = 120
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
PHENIXrefinement
SHELXphasing
HKL2Mapphasing
XDSdata scaling
XDSdata reduction
xia2data reduction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01 GM115261
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesR01-CA217255
National Science Foundation (NSF, United States)United StatesSTC 1231306

Revision History 

  • Version 1.0: 2020-11-18
    Type: Initial release