6UD3

Full length Glycine receptor reconstituted in lipid nanodisc in Gly/PTX-bound open/blocked conformation


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report



Literature

Mechanisms of activation and desensitization of full-length glycine receptor in lipid nanodiscs

Kumar, A.Basak, S.Rao, S.Gicheru, Y.W.Mayer, M.Sansom, M.S.Chakrapani, S.

(2020) Nat Commun 


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Glycine receptor subunit alphaZ1A, B, C, D, E459Danio rerioMutation(s): 0 
Gene Names: glra1
Find proteins for O93430 (Danio rerio)
Explore O93430 
Go to UniProtKB:  O93430
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
RI5
Query on RI5

Download CCD File 
A
(1aR,2aR,3S,6R,6aS,8aS,8bR,9R)-2a-hydroxy-8b-methyl-9-(prop-1-en-2-yl)hexahydro-3,6-methano-1,5,7-trioxacyclopenta[ij]c yclopropa[a]azulene-4,8(3H)-dione
C15 H16 O6
PIMZUZSSNYHVCU-YKWPQBAZSA-N
 Ligand Interaction
NAG
Query on NAG

Download CCD File 
A, B, C, D, E
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
GLY
Query on GLY

Download CCD File 
A, B, C, D, E
GLYCINE
C2 H5 N O2
DHMQDGOQFOQNFH-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States5R01GM108921-05
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States1R01GM131216-01

Revision History 

  • Version 1.0: 2020-07-29
    Type: Initial release