6S6H

Crystal structure of the DNA binding domain of the chromosome-partitioning protein ParB complexed to the centromeric parS site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.216 
  • R-Value Observed: 0.217 

wwPDB Validation   3D Report Full Report



Literature

Evolving a new protein-DNA interface via a sequential introduction of permissive and specificity-switching mutations

Jalal, A.S.B.Tran, N.T.Stevenson, C.E.M.Tan, E.X.Lawson, D.M.Le, T.B.K.

To be published.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Chromosome-partitioning protein ParBAB143Caulobacter vibrioides NA1000Mutation(s): 0 
Gene Names: parBCCNA_03868
Find proteins for B8GW30 (Caulobacter vibrioides (strain NA1000 / CB15N))
Explore B8GW30 
Go to UniProtKB:  B8GW30
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 2
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(*GP*AP*TP*GP*TP*TP*TP*CP*AP*CP*GP*TP*GP*AP*AP*AP*CP*AP*TP*C)-3')C, D20Caulobacter vibrioides
    Small Molecules
    Ligands 1 Unique
    IDChainsName / Formula / InChI Key2D Diagram3D Interactions
    GOL
    Query on GOL

    Download CCD File 
    A
    GLYCEROL
    C3 H8 O3
    PEDCQBHIVMGVHV-UHFFFAOYSA-N
     Ligand Interaction
    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 2.40 Å
    • R-Value Free: 0.232 
    • R-Value Work: 0.216 
    • R-Value Observed: 0.217 
    • Space Group: C 1 2 1
    Unit Cell:
    Length ( Å )Angle ( ˚ )
    a = 127.099α = 90
    b = 40.717β = 121.4
    c = 94.004γ = 90
    Software Package:
    Software NamePurpose
    REFMACrefinement
    DIALSdata scaling
    PDB_EXTRACTdata extraction
    DIALSdata reduction
    PHASERphasing

    Structure Validation

    View Full Validation Report



    Entry History & Funding Information

    Deposition Data


    Funding OrganizationLocationGrant Number
    Royal SocietyUnited KingdomUF140053
    Royal SocietyUnited KingdomRG150448
    Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/P018165/1
    Biotechnology and Biological Sciences Research CouncilUnited KingdomBBS/E/J/000C0683
    Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/P012523/1

    Revision History 

    • Version 1.0: 2020-07-15
      Type: Initial release