6RQA

Crystal structure of the iminosuccinate reductase of Paracoccus denitrificans in complex with NAD+


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.176 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Marine Proteobacteria metabolise glycolate via the beta-hydroxyaspartate cycle

Schada von Borzyskowski, L.Severi, F.Krueger, K.Hermann, L.Gilardet, A.Sippel, F.Claus, P.Cortina, N.S.Glatter, T.Pommerenke, B.Zarzycki, J.Bremer, E.Maier, U.G.Fuchs, B.M.Amann, R.I.Erb, T.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
iminosuccinate reductase
A, B
341Paracoccus denitrificans (strain Pd 1222)Mutation(s): 0 
EC: 4.3.1.12
Find proteins for A1B8Z0 (Paracoccus denitrificans (strain Pd 1222))
Go to UniProtKB:  A1B8Z0
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
TB
Query on TB

Download SDF File 
Download CCD File 
A
TERBIUM(III) ION
Tb
HKCRVXUAKWXBLE-UHFFFAOYSA-N
 Ligand Interaction
NAD
Query on NAD

Download SDF File 
Download CCD File 
A, B
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
 Ligand Interaction
7MT
Query on 7MT

Download SDF File 
Download CCD File 
B
Tb-Xo4
C20 H23 N5 O4 Tb
JWLMJALAUZUFRC-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.176 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 50.386α = 90.00
b = 72.407β = 90.00
c = 164.266γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PDB_EXTRACTdata extraction
PHENIXrefinement
PHENIXphasing
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research FoundationGermanySFB987
European UnionGermanyFET686330

Revision History 

  • Version 1.0: 2019-08-14
    Type: Initial release