Download MendeleyPhotorhabdus Virulence Cassette (PVC) PAAR repeat protein Pvc10 in complex with a T4 gp5 beta-helix fragment modified to mimic Pvc8, the central spike protein of PVC
Buth, S.A., Shneider, M.M., Leiman, P.G.To be published.
6P22
Photorhabdus Virulence Cassette (PVC) PAAR repeat protein Pvc10 in complex with a T4 gp5 beta-helix fragment modified to mimic Pvc8, the central spike protein of PVC
- DOI: 10.2210/pdb6P22/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Escherichia virus T4, Photorhabdus laumondii subsp. laumondii TTO1
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2019-05-20 Released: 2020-05-27
- Funding Organization(s): Swiss National Science Foundation
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.29 Å
- R-Value Free: 0.222
- R-Value Work: 0.182
- R-Value Observed: 0.184
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CHIMERA OF CENTRAL SPIKE PROTEINS GP5 FROM PHAGE T4 AND PVC8 FROM PVC | A, B, C | 97 | Escherichia virus T4, Photorhabdus laumondii subsp. laumondii TTO1 This entity is chimeric | Mutation(s): 0 Gene Names: 5, plu1723 EC: 3.2.1.17 |  |
Find proteins for Q7N647 (Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)) Explore Q7N647 Go to UniProtKB: Q7N647 | |||||
Find proteins for P16009 (Enterobacteria phage T4) Explore P16009 Go to UniProtKB: P16009 | |||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PAAR-REPEAT CENTRAL SPIKE TIP PROTEIN | D | 138 | Photorhabdus laumondii subsp. laumondii TTO1 | Mutation(s): 0 Gene Names: plu1721 |  |
Find proteins for Q7N648 (Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)) Explore Q7N648 Go to UniProtKB: Q7N648 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| STE Query on STE | A | STEARIC ACID C18 H36 O2 QIQXTHQIDYTFRH-UHFFFAOYSA-N |  | Ligand Interaction | |
| ELA Query on ELA | B | 9-OCTADECENOIC ACID C18 H34 O2 ZQPPMHVWECSIRJ-MDZDMXLPSA-N |  | Ligand Interaction | |
| PLM Query on PLM | C | PALMITIC ACID C16 H32 O2 IPCSVZSSVZVIGE-UHFFFAOYSA-N |  | Ligand Interaction | |
| MG Query on MG | A | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.29 Å
- R-Value Free: 0.222
- R-Value Work: 0.182
- R-Value Observed: 0.184
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 34.305 | α = 90 |
| b = 56.963 | β = 90 |
| c = 222.994 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| X-GEN | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2019-05-20
- Released Date: 2020-05-27 Deposition Author(s): Buth, S.A., Shneider, M.M., Leiman, P.G.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Swiss National Science Foundation | Switzerland | 310030_144243 |
Revision History (Full details and data files)
- Version 1.0: 2020-05-27
Type: Initial release
