6O4A

CRYSTAL STRUCTURE OF SMT FUSION PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FROM BURKHOLDERIA PSEUDOMALLEI COMPLEXED WITH SF355


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.157 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

CRYSTAL STRUCTURE OF SMT FUSION PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FROM BURKHOLDERIA PSEUDOMALLEI COMPLEXED WITH SF355

Iwasaki, J.Lorimer, D.D.Vivoli, M.Harmer, N.J.Kibble, E.A.Peacock, C.S.Abendroth, J.Mayclin, S.J.Dranow, D.M.Pierce, P.G.Fox III, D.Lewis, M.Bzdyl, N.Kristensen, S.Schmidberger, J.W.Bond, C.B.Seufert, F.Schmitz, J.Norville, I.H.Myler, P.J.Holzgrabe, U.Sarkar-Tyson, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin-like protein SMT3,Peptidyl-prolyl cis-trans isomerase
A, B, C, D
209Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Burkholderia pseudomallei (strain 1710b)
This entity is chimeric
Mutation(s): 0 
Gene Names: SMT3,
EC: 5.2.1.8
Find proteins for Q12306 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q12306
Find proteins for Q3JK38 (Burkholderia pseudomallei (strain 1710b))
Go to UniProtKB:  Q3JK38
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A, C
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
LLD
Query on LLD

Download SDF File 
Download CCD File 
A, B, C, D
2-(pyridin-3-ylcarbonylamino)ethyl (2~{S})-1-(phenylmethyl)sulfonylpiperidine-2-carboxylate
C21 H25 N3 O5 S
YBYJEZJXJIOQAP-IBGZPJMESA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 62.820α = 90.00
b = 32.650β = 90.01
c = 178.190γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
PDB_EXTRACTdata extraction
XDSdata reduction
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-02-12
    Type: Initial release