6HJE

Trypanosoma cruzi proline racemase in complex with inhibitor NG-P27


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.177 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Designed mono- and di-covalent inhibitors trap modeled functional motions for Trypanosoma cruzi proline racemase in crystallography.

Amaral, P.A.Autheman, D.de Melo, G.D.Gouault, N.Cupif, J.F.Goyard, S.Dutra, P.Coatnoan, N.Cosson, A.Monet, D.Saul, F.Haouz, A.Uriac, P.Blondel, A.Minoprio, P.

(2018) PLoS Negl Trop Dis 12: e0006853-e0006853


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Proline racemase A
A, B
414Trypanosoma cruzi (strain CL Brener)Mutation(s): 0 
Gene Names: PA45-A
EC: 5.1.1.4
Find proteins for Q4DA80 (Trypanosoma cruzi (strain CL Brener))
Go to UniProtKB:  Q4DA80
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
7N0
Query on 7N0

Download SDF File 
Download CCD File 
A, B
2-[(1~{S})-2-oxidanylidenecyclopentyl]ethanoic acid
C7 H10 O3
OLLLIBGOZUPLOK-YFKPBYRVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.177 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 133.233α = 90.00
b = 90.640β = 126.04
c = 85.394γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
French National Research AgencyFranceANR-14-CE16-0001-01

Revision History 

  • Version 1.0: 2018-11-07
    Type: Initial release