6E1Z

Displacement of WDR5 from chromatin by a pharmacological WIN site inhibitor with picomolar affinity


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.163 
  • R-Value Work: 0.143 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

WDR5 in complex with a WIN site inhibitor

Phan, J.Wang, F.Fesik, S.W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
WD repeat-containing protein 5
A, B
313Homo sapiensMutation(s): 0 
Gene Names: WDR5 (BIG3)
Find proteins for P61964 (Homo sapiens)
Go to Gene View: WDR5
Go to UniProtKB:  P61964
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HLP
Query on HLP

Download SDF File 
Download CCD File 
A, B
5-[(1H-imidazol-1-yl)methyl]furan-2-carboxylic acid
C9 H8 N2 O3
NNJVURHBCVIUHK-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.163 
  • R-Value Work: 0.143 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 46.589α = 71.94
b = 53.252β = 89.94
c = 65.524γ = 73.61
Software Package:
Software NamePurpose
HKL-2000data scaling
AMoREphasing
PHENIXrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-07-10 
  • Released Date: 2019-03-13 
  • Deposition Author(s): Phan, J., Fesik, S.W.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research InstituteUnited StatesWDR5-MLL1 NExT Leidos Biomedical Research 16X117 HHSN2162008000 01E UNIV 57992

Revision History 

  • Version 1.0: 2019-03-13
    Type: Initial release