6BRB

Novel non-antibody protein scaffold targeting CD40L


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.82 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.225 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

MEDI4920, a novel non-antibody protein scaffold targeting CD40L, inhibits humoral immune activation in animal models and healthy subjects

Albulescu, M.Baca, M.Carter, L.Coyle, A.Reyes, M.Drabic, S.Eck, S.Ettinger, R.Godwood, A.Grinberg, L.Gunsior, M.Herbst, R.Howe, D.Huang, F.Karnell, J.L.Kolbeck, R.Li, J.Morehouse, C.Oganesyan, V.Sinibaldi, D.Streicher, K.Thisted, T.Wang, L.Xiong, X.Yusuf, I.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CD40 ligand
A
142Homo sapiensMutation(s): 0 
Gene Names: CD40LG (CD40L, TNFSF5, TRAP)
Find proteins for P29965 (Homo sapiens)
Go to Gene View: CD40LG
Go to UniProtKB:  P29965
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Tn3-like
D
87N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BMA
Query on BMA

Download SDF File 
Download CCD File 
A
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.82 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.225 
  • Space Group: P 3 2 1
Unit Cell:
Length (Å)Angle (°)
a = 93.528α = 90.00
b = 93.528β = 90.00
c = 66.685γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data scaling
MOLREPphasing
HKL-2000data reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-12-05
    Type: Initial release