5TR4

Structure of Ubiquitin activating enzyme (Uba1) in complex with ubiquitin and TAK-243


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.216 
  • R-Value Observed: 0.217 

wwPDB Validation   3D Report Full Report



Literature

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquitin-activating enzyme E1 1 AC1017Saccharomyces cerevisiae S288CMutation(s): 2 
Gene Names: UBA1YKL210W
EC: 6.2.1.45
Find proteins for P22515 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P22515
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquitin BD76Bos taurusMutation(s): 0 
Gene Names: UBB
Find proteins for P0CG53 (Bos taurus)
Explore P0CG53 
Go to UniProtKB:  P0CG53
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
61T
Query on 61T

Download Ideal Coordinates CCD File 
B, D
[(1~{R},2~{R},3~{S},4~{R})-2,3-bis(oxidanyl)-4-[[2-[3-(trifluoromethylsulfanyl)phenyl]pyrazolo[1,5-a]pyrimidin-7-yl]amino]cyclopentyl]methyl sulfamate
C19 H20 F3 N5 O5 S2
KJDAGXLMHXUAGV-DGWLBADLSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.216 
  • R-Value Observed: 0.217 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 212.485α = 90
b = 172.148β = 90
c = 79.424γ = 90
Software Package:
Software NamePurpose
HKL-2000data scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
MOLREPphasing
HKLdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2016-10-25 
  • Released Date: 2017-11-01 
  • Deposition Author(s): Sintchak, M.D.

Revision History 

  • Version 1.0: 2017-11-01
    Type: Initial release