5O31

Mitochondrial complex I in the deactive state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.13 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Structure of the Deactive State of Mammalian Respiratory Complex I.

Blaza, J.N.Vinothkumar, K.R.Hirst, J.

(2018) Structure 26: 312-319.e3

  • DOI: 10.1016/j.str.2017.12.014

  • PubMed Abstract: 
  • Complex I (NADH:ubiquinone oxidoreductase) is central to energy metabolism in mammalian mitochondria. It couples NADH oxidation by ubiquinone to proton transport across the energy-conserving inner membrane, catalyzing respiration and driving ATP synt ...

    Complex I (NADH:ubiquinone oxidoreductase) is central to energy metabolism in mammalian mitochondria. It couples NADH oxidation by ubiquinone to proton transport across the energy-conserving inner membrane, catalyzing respiration and driving ATP synthesis. In the absence of substrates, active complex I gradually enters a pronounced resting or deactive state. The active-deactive transition occurs during ischemia and is crucial for controlling how respiration recovers upon reperfusion. Here, we set a highly active preparation of Bos taurus complex I into the biochemically defined deactive state, and used single-particle electron cryomicroscopy to determine its structure to 4.1 Å resolution. We show that the deactive state arises when critical structural elements that form the ubiquinone-binding site become disordered, and we propose reactivation is induced when substrate binding to the NADH-reduced enzyme templates their reordering. Our structure both rationalizes biochemical data on the deactive state and offers new insights into its physiological and cellular roles.


    Organizational Affiliation

    MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK.,MRC Mitochondrial Biology Unit, University of Cambridge, Wellcome Trust/MRC Building, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0XY, UK.,MRC Mitochondrial Biology Unit, University of Cambridge, Wellcome Trust/MRC Building, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0XY, UK. Electronic address: jh@mrc-mbu.cam.ac.uk.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NADH-ubiquinone oxidoreductase chain 3
A
115Bos taurusMutation(s): 0 
Gene Names: MT-ND3 (MTND3, NADH3, ND3)
EC: 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P03898 (Bos taurus)
Go to Gene View: MT-ND3
Go to UniProtKB:  P03898
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial
B
179Bos taurusMutation(s): 0 
Gene Names: NDUFS7
EC: 1.6.99.3, 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P42026 (Bos taurus)
Go to Gene View: NDUFS7
Go to UniProtKB:  P42026
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial
C
228Bos taurusMutation(s): 0 
Gene Names: NDUFS3
EC: 1.6.99.3, 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P23709 (Bos taurus)
Go to Gene View: NDUFS3
Go to UniProtKB:  P23709
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial
D
430Bos taurusMutation(s): 0 
Gene Names: NDUFS2
EC: 1.6.99.3, 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P17694 (Bos taurus)
Go to Gene View: NDUFS2
Go to UniProtKB:  P17694
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
E
217Bos taurusMutation(s): 0 
Gene Names: NDUFV2
EC: 1.6.99.3, 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P04394 (Bos taurus)
Go to Gene View: NDUFV2
Go to UniProtKB:  P04394
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
F
464Bos taurusMutation(s): 0 
Gene Names: NDUFV1 (UQOR1)
EC: 1.6.99.3, 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P25708 (Bos taurus)
Go to Gene View: NDUFV1
Go to UniProtKB:  P25708
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
NADH-ubiquinone oxidoreductase chain 1
H
318Bos taurusMutation(s): 0 
Gene Names: MT-ND1 (MTND1, NADH1, ND1)
EC: 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P03887 (Bos taurus)
Go to Gene View: MT-ND1
Go to UniProtKB:  P03887
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial
I
176Bos taurusMutation(s): 0 
Gene Names: NDUFS8
EC: 1.6.99.3, 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P42028 (Bos taurus)
Go to Gene View: NDUFS8
Go to UniProtKB:  P42028
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
NADH-ubiquinone oxidoreductase chain 6
J
175Bos taurusMutation(s): 0 
Gene Names: MT-ND6 (MTND6, NADH6, ND6)
EC: 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P03924 (Bos taurus)
Go to Gene View: MT-ND6
Go to UniProtKB:  P03924
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
NADH-ubiquinone oxidoreductase chain 4L
K
98Bos taurusMutation(s): 0 
Gene Names: MT-ND4L (MTND4L, NADH4L, ND4L)
EC: 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P03902 (Bos taurus)
Go to Gene View: MT-ND4L
Go to UniProtKB:  P03902
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
NADH-ubiquinone oxidoreductase chain 5
L
606Bos taurusMutation(s): 0 
Gene Names: MT-ND5 (MTND5, NADH5, ND5)
EC: 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P03920 (Bos taurus)
Go to Gene View: MT-ND5
Go to UniProtKB:  P03920
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
NADH-ubiquinone oxidoreductase chain 4
M
459Bos taurusMutation(s): 0 
Gene Names: MT-ND4 (MTND4, NADH4, ND4)
EC: 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P03910 (Bos taurus)
Go to Gene View: MT-ND4
Go to UniProtKB:  P03910
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
NADH-ubiquinone oxidoreductase chain 2
N
347Bos taurusMutation(s): 0 
Gene Names: MT-ND2 (MTND2, NADH2, ND2)
EC: 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P03892 (Bos taurus)
Go to Gene View: MT-ND2
Go to UniProtKB:  P03892
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial
O
320Bos taurusMutation(s): 0 
Gene Names: NDUFA10
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P34942 (Bos taurus)
Go to Gene View: NDUFA10
Go to UniProtKB:  P34942
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9
P
297N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
S
98Bos taurusMutation(s): 0 
Gene Names: NDUFA2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for Q02370 (Bos taurus)
Go to Gene View: NDUFA2
Go to UniProtKB:  Q02370
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
Acyl carrier protein, mitochondrial
T, U
88Bos taurusMutation(s): 0 
Gene Names: NDUFAB1
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P52505 (Bos taurus)
Go to Gene View: NDUFAB1
Go to UniProtKB:  P52505
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
V
115Bos taurusMutation(s): 0 
Gene Names: NDUFA5
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P23935 (Bos taurus)
Go to Gene View: NDUFA5
Go to UniProtKB:  P23935
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
W
128Bos taurusMutation(s): 0 
Gene Names: NDUFA6
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for Q02366 (Bos taurus)
Go to Gene View: NDUFA6
Go to UniProtKB:  Q02366
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11
Y
141Bos taurusMutation(s): 0 
Gene Names: NDUFA11
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for Q8HXG6 (Bos taurus)
Go to Gene View: NDUFA11
Go to UniProtKB:  Q8HXG6
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1
a
70Bos taurusMutation(s): 0 
Gene Names: NDUFA1
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for Q02377 (Bos taurus)
Go to Gene View: NDUFA1
Go to UniProtKB:  Q02377
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3,NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3
b
80Bos taurusMutation(s): 0 
Gene Names: NDUFA3
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for Q02371 (Bos taurus)
Go to Gene View: NDUFA3
Go to UniProtKB:  Q02371
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
c
49Bos taurusMutation(s): 0 
Gene Names: NDUFC1
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for Q02376 (Bos taurus)
Go to Gene View: NDUFC1
Go to UniProtKB:  Q02376
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5
e
105Bos taurusMutation(s): 0 
Gene Names: NDUFS5
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for Q02379 (Bos taurus)
Go to Gene View: NDUFS5
Go to UniProtKB:  Q02379
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1
f
57Bos taurusMutation(s): 0 
Gene Names: NDUFB1
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for Q02378 (Bos taurus)
Go to Gene View: NDUFB1
Go to UniProtKB:  Q02378
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial
g
125Bos taurusMutation(s): 0 
Gene Names: NDUFB11
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for Q8HXG5 (Bos taurus)
Go to Gene View: NDUFB11
Go to UniProtKB:  Q8HXG5
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6,NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6
i
111Bos taurusMutation(s): 0 
Gene Names: NDUFB6
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for Q02367 (Bos taurus)
Go to Gene View: NDUFB6
Go to UniProtKB:  Q02367
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2
j
52N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3
k
74N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8
l
120N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
o
136Bos taurusMutation(s): 0 
Gene Names: NDUFB7
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for Q02368 (Bos taurus)
Go to Gene View: NDUFB7
Go to UniProtKB:  Q02368
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10,NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10,NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10
p
169Bos taurusMutation(s): 0 
Gene Names: NDUFB10
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for Q02373 (Bos taurus)
Go to Gene View: NDUFB10
Go to UniProtKB:  Q02373
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
q
145Bos taurusMutation(s): 0 
Gene Names: NDUFA12
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for O97725 (Bos taurus)
Go to Gene View: NDUFA12
Go to UniProtKB:  O97725
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetails
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
G
704Bos taurusMutation(s): 0 
Gene Names: NDUFS1
EC: 1.6.99.3, 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P15690 (Bos taurus)
Go to Gene View: NDUFS1
Go to UniProtKB:  P15690
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial
s
75Bos taurusMutation(s): 0 
Gene Names: NDUFV3
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P25712 (Bos taurus)
Go to Gene View: NDUFV3
Go to UniProtKB:  P25712
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
Q
133Bos taurusMutation(s): 0 
Gene Names: NDUFS4
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for Q02375 (Bos taurus)
Go to Gene View: NDUFS4
Go to UniProtKB:  Q02375
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial
R
96Bos taurusMutation(s): 0 
Gene Names: NDUFS6
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P23934 (Bos taurus)
Go to Gene View: NDUFS6
Go to UniProtKB:  P23934
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7
r
112Bos taurusMutation(s): 0 
Gene Names: NDUFA7 (CI-B14-5A)
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for Q05752 (Bos taurus)
Go to Gene View: NDUFA7
Go to UniProtKB:  Q05752
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial
h
143Bos taurusMutation(s): 0 
Gene Names: NDUFB5
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for Q02380 (Bos taurus)
Go to Gene View: NDUFB5
Go to UniProtKB:  Q02380
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 subunit C2,NADH dehydrogenase [ubiquinone] 1 subunit C2
d
116Bos taurusMutation(s): 0 
Gene Names: NDUFC2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for Q02827 (Bos taurus)
Go to Gene View: NDUFC2
Go to UniProtKB:  Q02827
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8
X
171Bos taurusMutation(s): 0 
Gene Names: NDUFA8
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P42029 (Bos taurus)
Go to Gene View: NDUFA8
Go to UniProtKB:  P42029
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4
m
128Bos taurusMutation(s): 0 
Gene Names: NDUFB4
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for P48305 (Bos taurus)
Go to Gene View: NDUFB4
Go to UniProtKB:  P48305
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
n
178Bos taurusMutation(s): 0 
Gene Names: NDUFB9 (UQOR22)
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for Q02369 (Bos taurus)
Go to Gene View: NDUFB9
Go to UniProtKB:  Q02369
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13,NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
Z
144Bos taurusMutation(s): 0 
Gene Names: NDUFA13 (GRIM19)
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Respiratory Complex I, single-particle cryo-EM structure
Find proteins for Q95KV7 (Bos taurus)
Go to Gene View: NDUFA13
Go to UniProtKB:  Q95KV7
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SF4
Query on SF4

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Download CCD File 
B, F, G, I
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
 Ligand Interaction
ZN
Query on ZN

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Download CCD File 
R
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
FMN
Query on FMN

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Download CCD File 
F
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
NAP
Query on NAP

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Download CCD File 
P
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
 Ligand Interaction
FES
Query on FES

Download SDF File 
Download CCD File 
E, G
FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
UNK
Query on UNK
b, d, i, j, k, l, p, P, Z
L-PEPTIDE LINKINGC4 H9 N O2

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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.13 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
Software Package:
Software NamePurpose
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (United Kingdom)United KingdomU105663141
Medical Research Council (United Kingdom)United KingdomU105184322

Revision History 

  • Version 1.0: 2018-01-17
    Type: Initial release
  • Version 1.1: 2018-01-31
    Type: Data processing
  • Version 1.2: 2018-03-21
    Type: Database references
  • Version 1.3: 2018-10-10
    Type: Data collection, Refinement description, Structure summary