5LUL

Structure of a triple variant of cutinase 2 from Thermobifida cellulosilytica

  • Classification: HYDROLASE
  • Organism(s): Thermobifida cellulosilytica
  • Expression System: Escherichia coli BL21(DE3)
  • Mutation(s): Yes 

  • Deposited: 2016-09-09 Released: 2017-07-12 
  • Deposition Author(s): Hromic, A., Lyskowski, A., Gruber, K.
  • Funding Organization(s): Federal Ministry of Science, Research and Economy (BMWFW), Federal Ministry of Traffic, Innovation and Technology (bmvit), Styrian Business Promotion Agency SFG, Standortagentur Tirol, Government of Lower Austria and Business Agency Vienna, Austrian Research Promotion Agency FFG

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.159 
  • R-Value Observed: 0.160 

wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history


Literature

Small cause, large effect: Structural characterization of cutinases from Thermobifida cellulosilytica.

Ribitsch, D.Hromic, A.Zitzenbacher, S.Zartl, B.Gamerith, C.Pellis, A.Jungbauer, A.yskowski, A.Steinkellner, G.Gruber, K.Tscheliessnig, R.Herrero Acero, E.Guebitz, G.M.

(2017) Biotechnol Bioeng 114: 2481-2488

  • DOI: https://doi.org/10.1002/bit.26372
  • Primary Citation of Related Structures:  
    5LUI, 5LUJ, 5LUK, 5LUL

  • PubMed Abstract: 

    We have investigated the structures of two native cutinases from Thermobifida cellulosilytica, namely Thc_Cut1 and Thc_Cut2 as well as of two variants, Thc_Cut2_DM (Thc_Cut2_ Arg29Asn_Ala30Val) and Thc_Cut2_TM (Thc_Cut2_Arg19Ser_Arg29Asn_Ala30Val). The four enzymes showed different activities towards the aliphatic polyester poly(lactic acid) (PLLA). The crystal structures of the four enzymes were successfully solved and in combination with Small Angle X-Ray Scattering (SAXS) the structural features responsible for the selectivity difference were elucidated. Analysis of the crystal structures did not indicate significant conformational differences among the different cutinases. However, the distinctive SAXS scattering data collected from the enzymes in solution indicated a remarkable surface charge difference. The difference in the electrostatic and hydrophobic surface properties could explain potential alternative binding modes of the four cutinases on PLLA explaining their distinct activities. Biotechnol. Bioeng. 2017;114: 2481-2488. © 2017 Wiley Periodicals, Inc.


  • Organizational Affiliation

    Austrian Centre of Industrial Biotechnology ACIB, Petergsasse, 14 8010, Graz, Austria.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cutinase 2
A, B
265Thermobifida cellulosilyticaMutation(s): 3 
Gene Names: cut2
UniProt
Find proteins for E9LVH9 (Thermobifida cellulosilytica)
Explore E9LVH9 
Go to UniProtKB:  E9LVH9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE9LVH9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.159 
  • R-Value Observed: 0.160 
  • Space Group: P 3 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 110.438α = 90
b = 110.438β = 90
c = 75.302γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
BUCCANEERmodel building
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Federal Ministry of Science, Research and Economy (BMWFW)Austria--
Federal Ministry of Traffic, Innovation and Technology (bmvit)Austria--
Styrian Business Promotion Agency SFGAustria--
Standortagentur TirolAustria--
Government of Lower Austria and Business Agency ViennaAustria--
Austrian Research Promotion Agency FFGAustria--

Revision History  (Full details and data files)

  • Version 1.0: 2017-07-12
    Type: Initial release
  • Version 1.1: 2017-08-09
    Changes: Database references
  • Version 1.2: 2017-10-04
    Changes: Database references
  • Version 2.0: 2024-01-17
    Changes: Atomic model, Data collection, Database references, Derived calculations, Refinement description