5EUI

Structure of predicted ancestral pika hemoglobin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

structure of predicted pika ancestral hemoglobin at 1.45 Angstroms resolution.

Inoguchi, N.Natarajan, C.Storz, J.F.Moriyama, H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HBA protein
A
141Ochotona princepsMutation(s): 0 
Gene Names: HBA
Find proteins for U5KQB1 (Ochotona princeps)
Go to UniProtKB:  U5KQB1
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
HBB protein
B
146Ochotona princepsMutation(s): 0 
Gene Names: HBB
Find proteins for U5KNG4 (Ochotona princeps)
Go to Gene View: HBB
Go to UniProtKB:  U5KNG4
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HEM
Query on HEM

Download SDF File 
Download CCD File 
A, B
PROTOPORPHYRIN IX CONTAINING FE
HEME
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.194 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 63.350α = 90.00
b = 91.412β = 90.00
c = 103.537γ = 90.00
Software Package:
Software NamePurpose
PHENIXphasing
HKL-2000data reduction
HKL-2000data scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Heart, Lung, and Blood InstituteUnited StatesHL087216-07
National Science Foundation (United States)United StatesMCB-151763 6

Revision History 

  • Version 1.0: 2016-11-30
    Type: Initial release
  • Version 1.1: 2017-09-27
    Type: Author supporting evidence