5BOK

Ferredoxin component of 3-nitrotoluene dioxygenase from Diaphorobacter sp. strain DS2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.231 
  • R-Value Observed: 0.233 

wwPDB Validation   3D Report Full Report



Literature

Ferredoxin component of 3-nitrotoluene dioxygenase from Diaphorobacter sp. strain DS2

Ramaswamy, S.Kumari, A.Singh, D.Qurunath, R.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
FerredoxinA104Diaphorobacter sp. DS2Mutation(s): 0 
Gene Names: mntAb
Find proteins for M9PSS0 (Diaphorobacter sp. DS2)
Explore M9PSS0 
Go to UniProtKB:  M9PSS0
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FES
Query on FES

Download Ideal Coordinates CCD File 
A
FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
 Ligand Interaction
FE
Query on FE

Download Ideal Coordinates CCD File 
A
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.231 
  • R-Value Observed: 0.233 
  • Space Group: I 4 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79.53α = 90
b = 79.53β = 90
c = 108.97γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
MOSFLMdata reduction
SCALAdata scaling
d*TREKphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Department of biotechnologyIndia--

Revision History 

  • Version 1.0: 2016-07-27
    Type: Initial release