4P8S
Crystal structure of Nogo-receptor-2
- PDB DOI: https://doi.org/10.2210/pdb4P8S/pdb
- Classification: MEMBRANE PROTEIN
- Organism(s): Rattus norvegicus
- Expression System: Trichoplusia ni
- Mutation(s): No 
- Deposited: 2014-04-01 Released: 2014-04-09 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.205 
- R-Value Work: 0.171 
- R-Value Observed: 0.173 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Reticulon-4 receptor-like 2 | 282 | Rattus norvegicus | Mutation(s): 0  Gene Names: Rtn4rl2, Ngrh1 | ||
UniProt | |||||
Find proteins for Q80WD1 (Rattus norvegicus) Explore Q80WD1  Go to UniProtKB:  Q80WD1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q80WD1 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | D [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.205 
- R-Value Work: 0.171 
- R-Value Observed: 0.173 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 56.822 | α = 90 |
b = 56.517 | β = 90 |
c = 128.96 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
Entry History 
Deposition Data
- Released Date: 2014-04-09  Deposition Author(s): Semavina, M., Saha, N., Kolev, M.V., Giger, R.J., Himanen, J.P., Nikolov, D.B.
Revision History (Full details and data files)
- Version 1.0: 2014-04-09
Type: Initial release - Version 1.1: 2015-02-11
Changes: Non-polymer description - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Source and taxonomy, Structure summary - Version 2.1: 2023-12-27
Changes: Data collection, Database references, Structure summary