4XEN
High pressure protein crystallography of hen egg white lysozyme in complex with Tetra-N-acetylchitotetraose at 920 MPa
- PDB DOI: https://doi.org/10.2210/pdb4XEN/pdb
- Classification: HYDROLASE
- Organism(s): Gallus gallus
- Mutation(s): No 
- Deposited: 2014-12-24 Released: 2015-04-08 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.210 
- R-Value Work: 0.165 
- R-Value Observed: 0.167 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Lysozyme C | 129 | Gallus gallus | Mutation(s): 0  EC: 3.2.1.17 | ||
UniProt | |||||
Find proteins for P00698 (Gallus gallus) Explore P00698  Go to UniProtKB:  P00698 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00698 | ||||
Sequence AnnotationsExpand | |||||
|
Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | B | 4 | N/A | ||
Glycosylation Resources | |||||
GlyTouCan:  G01361SX GlyCosmos:  G01361SX GlyGen:  G01361SX |
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CL Query on CL | D [auth A], E [auth A], F [auth A], G [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
NA Query on NA | C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.210 
- R-Value Work: 0.165 
- R-Value Observed: 0.167 
- Space Group: P 43 21 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 76.152 | α = 90 |
b = 76.152 | β = 90 |
c = 37.962 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
Entry History 
Deposition Data
- Released Date: 2015-04-08  Deposition Author(s): Yamada, H., Watanabe, N., Nagae, T.
Revision History (Full details and data files)
- Version 1.0: 2015-04-08
Type: Initial release - Version 1.1: 2015-04-22
Changes: Database references - Version 1.2: 2020-02-05
Changes: Data collection, Derived calculations, Source and taxonomy - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-11-08
Changes: Data collection, Database references, Refinement description, Structure summary