4L1R
Glycoprotein B from Herpes Simplex Virus type 1, A549T Rate-of-Entry mutant, low-pH
- DOI: 10.2210/pdb4L1R/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Human alphaherpesvirus 1 strain KOS
- Expression System: Spodoptera frugiperda
- Mutation(s): Yes
- Deposited: 2013-06-03 Released: 2013-06-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.03 Å
- R-Value Free: 0.243
- R-Value Work: 0.201
- R-Value Observed: 0.203
wwPDB Validation 3D Report Full Report
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Envelope glycoprotein B | A, B | 703 | Human alphaherpesvirus 1 strain KOS | Mutation(s): 1 Gene Names: gB, UL27 |  |
Find proteins for P06437 (Human herpesvirus 1 (strain KOS)) Explore P06437 Go to UniProtKB: P06437 | |||||
Protein Feature ViewExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
| 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | C, D | 2 |  | N-Glycosylation | Oligosaccharides Interaction |
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | Ligand Interaction | |
| CL Query on CL | A | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.03 Å
- R-Value Free: 0.243
- R-Value Work: 0.201
- R-Value Observed: 0.203
- Space Group: P 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 117.432 | α = 90 |
| b = 117.432 | β = 90 |
| c = 160.42 | γ = 120 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Deposited Date: 2013-06-03
- Released Date: 2013-06-26 Deposition Author(s): Stampfer, S.D., Heldwein, E.E.
