Download MendeleyThe structure of CyaY from Burkholderia cenocepacia
Clifton, M.C., Davies, D., Sankaran, B.To be published.
4JPD
The structure of CyaY from Burkholderia cenocepacia
- PDB DOI: https://doi.org/10.2210/pdb4JPD/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Burkholderia cenocepacia J2315
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2013-03-19 Released: 2013-03-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.196
- R-Value Work: 0.162
- R-Value Observed: 0.164
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein CyaY | 112 | Burkholderia cenocepacia J2315 | Mutation(s): 0 Gene Names: cyaY, BceJ2315_02750, BCAL0273 |  | |
UniProt | |||||
Find proteins for B4E5Z6 (Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)) Explore B4E5Z6 Go to UniProtKB: B4E5Z6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B4E5Z6 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| ACT Query on ACT | B [auth A], C [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| NA Query on NA | D [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.196
- R-Value Work: 0.162
- R-Value Observed: 0.164
- Space Group: P 43 3 2
- Diffraction Data: https://doi.org/10.18430/M34JPD
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 96.02 | α = 90 |
| b = 96.02 | β = 90 |
| c = 96.02 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2013-03-27 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2013-03-27
Type: Initial release - Version 1.1: 2023-09-20
Changes: Data collection, Database references, Derived calculations, Refinement description
