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Download EndnoteThe crystal structure of an aerotolerance-related membrane protein from Bacteroides fragilis NCTC 9343 with multiple mutations to serines.
Fan, Y., Tan, K., Bigelow, L., Bearden, J., Joachimiak, A.To be published.
4JDU
The crystal structure of an aerotolerance-related membrane protein from Bacteroides fragilis NCTC 9343 with multiple mutations to serines.
- DOI: 10.2210/pdb4JDU/pdb
- Classification: MEMBRANE PROTEIN
- Organism(s): Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343)
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): 6
- Deposited: 2013-02-25 Released: 2013-03-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.47 Å
- R-Value Free: 0.198
- R-Value Work: 0.182
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Aerotolerance-related membrane protein | A | 215 | Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343) | Mutation(s): 6 Gene Names: batB |
Find proteins for Q5LCG5 (Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343)) Go to UniProtKB: Q5LCG5 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FMT Query on FMT | A | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | Ligand Interaction | |
| CA Query on CA | A | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
| MLY Query on MLY | A | L-PEPTIDE LINKING | C8 H18 N2 O2 |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.47 Å
- R-Value Free: 0.198
- R-Value Work: 0.182
- Space Group: P 21 21 21
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 39.277 | α = 90.00 |
| b = 49.871 | β = 90.00 |
| c = 85.451 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| PHENIX | refinement |
| HKL-3000 | data scaling |
| DM | phasing |
| HKL-3000 | phasing |
| SHELXD | phasing |
| ARP | model building |
| HKL-3000 | data reduction |
| DM | model building |
| WARP | model building |
| MLPHARE | phasing |
Entry History
Deposition Data
- Deposited Date: 2013-02-25
- Released Date: 2013-03-27
- Deposition Author(s): Fan, Y., Tan, K., Bigelow, L., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History
- Version 1.0: 2013-03-27
Type: Initial release
