The crystal structure of an aerotolerance-related membrane protein from Bacteroides fragilis NCTC 9343 with multiple mutations to serines.
Fan, Y., Tan, K., Bigelow, L., Bearden, J., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Find similar proteins by: Sequence  |  Structure
Entity ID: 1 | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details |
Aerotolerance-related membrane protein | A | 215 | Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343) | Mutation(s): 6  Gene Names: batB |
Find proteins for Q5LCG5 (Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343)) Go to UniProtKB:  Q5LCG5 |
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FMT Query on FMT | A | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N | ![]() |  Ligand Interaction | |
CA Query on CA | A | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | ![]() |  Ligand Interaction |
Modified Residues  2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | ![]() | MET |
MLY Query on MLY | A | L-PEPTIDE LINKING | C8 H18 N2 O2 | ![]() | LYS |
Length (Å) | Angle (°) |
---|---|
a = 39.277 | α = 90.00 |
b = 49.871 | β = 90.00 |
c = 85.451 | γ = 90.00 |
Software Name | Purpose |
---|---|
SBC-Collect | data collection |
PHENIX | refinement |
HKL-3000 | data scaling |
DM | phasing |
HKL-3000 | phasing |
SHELXD | phasing |
ARP | model building |
HKL-3000 | data reduction |
DM | model building |
WARP | model building |
MLPHARE | phasing |