Macromolecule Content

Total Structure Weight: 76811.98
Atom Count: 5014
Residue Count: 663
Unique protein chains: 1

4IM2

Structure of Tank-Binding Kinase 1

DOI: 10.2210/pdb4IM2/pdb

Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Organism(s): Homo sapiens
Expression System: Spodoptera frugiperda
Mutation(s): 1

Deposited: 2013-01-01 Released: 2013-03-06
Deposition Author(s): Tu, D., Eck, M.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.5001 Å
R-Value Free: 0.255
R-Value Work: 0.197

wwPDB Validation3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of Tank-Binding Kinase 1

Tu, D., Zhu, Z., Zhou, A.Y., Yun, C., Lee, K., Toms, A.V., Li, Y., Dunn, G.P., Chan, E., Thai, T., Yang, S., Ficarro, S.B., Marto, J.A., Jeon, H., Hahn, W.C., Barbie, D.A., Eck, M.J.

(2013) Cell.Reports. --: --

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Serine/threonine-protein kinase TBK1	A	663	Homo sapiens	Mutations: D141N Gene Names: TBK1 (NAK) EC: 2.7.11.1
Find proteins for Q9UHD2 (Homo sapiens) Go to Gene View: TBK1 Go to UniProtKB: Q9UHD2
Protein Feature View Full Protein Feature View for Q9UHD2

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions	3D Interactions
CL Query on CL Download SDF File Download CCD File	A	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Ligand Interaction
BX7 Query on BX7 Download SDF File Download CCD File	A	N-(3-{[5-iodo-4-({3-[(thiophen-2-ylcarbonyl)amino]propyl}amino)pyrimidin-2-yl]amino}phenyl)pyrrolidine-1-carboxamide C₂₃ H₂₆ I N₇ O₂ S VAVXGGRQQJZYBL-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.5001 Å
R-Value Free: 0.255
R-Value Work: 0.197
Space Group: P 3₂ 2 1

Unit Cell:

Length (Å)	Angle (°)
a = 133.924	α = 90.00
b = 133.924	β = 90.00
c = 85.559	γ = 120.00

Software Package:

Software Name	Purpose
HKL-2000	data scaling
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data collection
SHARP	phasing

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History

Deposition Data

Deposited Date: 2013-01-01
Released Date: 2013-03-06
Deposition Author(s): Tu, D., Eck, M.J.

Revision History

Version 1.0: 2013-03-06
Type: Initial release
Version 1.1: 2013-03-20
Type: Derived calculations

The RCSB PDB is funded by a grant (DBI-1338415) from the National Science Foundation, the National Institutes of Health, and the US Department of Energy.