4GI6
Crystal structure of the MUTB F164L mutant in complex with glucose
- PDB DOI: https://doi.org/10.2210/pdb4GI6/pdb
- Classification: ISOMERASE
- Organism(s): Rhizobium sp. MX-45
- Expression System: Escherichia coli
- Mutation(s): Yes 
- Deposited: 2012-08-08 Released: 2013-02-13 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.219 
- R-Value Work: 0.169 
- R-Value Observed: 0.172 
This is version 1.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Sucrose isomerase | 557 | Rhizobium sp. MX-45 | Mutation(s): 1  Gene Names: mutB | ||
UniProt | |||||
Find proteins for M1E1F3 (Rhizobium sp. MX-45) Explore M1E1F3  Go to UniProtKB:  M1E1F3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | M1E1F3 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GLC Query on GLC | D [auth A] | alpha-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-DVKNGEFBSA-N | |||
TRS Query on TRS | I [auth B] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O | |||
GOL Query on GOL | E [auth A] F [auth A] G [auth A] J [auth B] K [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CA Query on CA | C [auth A], H [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.219 
- R-Value Work: 0.169 
- R-Value Observed: 0.172 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 63.9 | α = 90 |
b = 86.3 | β = 97.82 |
c = 118.3 | γ = 90 |
Software Name | Purpose |
---|---|
ADSC | data collection |
REFMAC | refinement |
XDS | data reduction |
XSCALE | data scaling |
REFMAC | phasing |
Entry History 
Deposition Data
- Released Date: 2013-02-13  Deposition Author(s): Lipski, A., Haser, R., Aghajari, N.
Revision History (Full details and data files)
- Version 1.0: 2013-02-13
Type: Initial release - Version 1.1: 2013-07-03
Changes: Database references - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.3: 2023-11-08
Changes: Data collection, Database references, Refinement description, Structure summary