4ETM

Crystal structure of YfkJ from Bacillus subtilis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.225 
  • R-Value Observed: 0.226 

wwPDB Validation 3D Report Full Report



Literature

Crystal structure of YfkJ from Bacillus subtilis

Cao, X.F.Su, X.D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Low molecular weight protein-tyrosine-phosphatase yfkJA, B173Bacillus subtilisMutation(s): 0 
Gene Names: yfkJBSU07880
EC: 3.1.3.48
Find proteins for O35016 (Bacillus subtilis (strain 168))
Explore O35016 
Go to UniProtKB:  O35016
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download CCD File 
A, B
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
K
Query on K

Download CCD File 
A, B
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
NA
Query on NA

Download CCD File 
A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.225 
  • R-Value Observed: 0.226 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 70.152α = 90
b = 52.922β = 102.84
c = 86.609γ = 90
Software Package:
Software NamePurpose
MAR345dtbdata collection
PHENIXmodel building
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2012-04-24 
  • Released Date: 2012-10-24 
  • Deposition Author(s): Cao, X.F., Su, X.D.

Revision History 

  • Version 1.0: 2012-10-24
    Type: Initial release