4E1F

Structure of a VgrG Vibrio cholerae toxin ACD domain Glu16Gln mutant in complex with ADP and Mn++


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.173 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure and functional characterization of the Vibrio cholerae toxin from the VgrG/MARTX family.

Durand, E.Audoly, G.Derrez, E.Spinelli, S.Ortiz-Lombardia, M.Cascales, E.Raoult, D.Cambillau, C.

(2012) J.Biol.Chem. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
VgrG protein
A
396Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)Mutation(s): 1 
Gene Names: vgrG1 (vgrG-1)
EC: 6.3.2.-
Find proteins for A0A0H3AIG7 (Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395))
Go to UniProtKB:  A0A0H3AIG7
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MN
Query on MN

Download SDF File 
Download CCD File 
A
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
ADP
Query on ADP

Download SDF File 
Download CCD File 
A
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.173 
  • Space Group: P 43 2 2
Unit Cell:
Length (Å)Angle (°)
a = 129.130α = 90.00
b = 129.130β = 90.00
c = 77.110γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
MAR345dtbdata collection
XSCALEdata scaling
MOLREPphasing
BUSTERrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-10-10
    Type: Initial release