Download MendeleySH3 domain specificity
Lugani, A., Lin, C.C., Shi, X., Hoh, F., Ponchon, L., Ktori, C., Dumas, C., Ladbury, J.E., Collette, Y., Morelli, X., Arold, S.T.To be published.
4D8D
Crystal structure of HIV-1 NEF Fyn-SH3 R96W variant
- DOI: 10.2210/pdb4D8D/pdb
- Classification: TRANSFERASE/PROTEIN BINDING
- Organism(s): Homo sapiens, Human immunodeficiency virus type 1 (BRU ISOLATE)
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2012-01-10 Released: 2013-01-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.52 Å
- R-Value Free: 0.238
- R-Value Work: 0.212
- R-Value Observed: 0.213
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tyrosine-protein kinase Fyn | A, C | 58 | Homo sapiens | Mutation(s): 1 Gene Names: FYN, FYN TYROSINE KINASE EC: 2.7.10.2 |  |
Find proteins for P06241 (Homo sapiens) Explore P06241 Go to UniProtKB: P06241 | |||||
NIH Common Fund Data Resources | |||||
PHAROS: P06241 | |||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein Nef | B, D | 151 | Human immunodeficiency virus type 1 (BRU ISOLATE) | Mutation(s): 0 Gene Names: nef |  |
Find proteins for P03406 (Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI)) Explore P03406 Go to UniProtKB: P03406 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.52 Å
- R-Value Free: 0.238
- R-Value Work: 0.212
- R-Value Observed: 0.213
- Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 108.01 | α = 90 |
| b = 108.01 | β = 90 |
| c = 224.961 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| SCALA | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Deposited Date: 2012-01-10
- Released Date: 2013-01-16 Deposition Author(s): Arold, S.T., Hoh, F., Dumas, C.
Revision History (Full details and data files)
- Version 1.0: 2013-01-16
Type: Initial release - Version 1.1: 2018-01-24
Changes: Database references
