4A7B

MMP13 IN COMPLEX WITH A NOVEL SELECTIVE NON ZINC BINDING INHIBITOR CMPD22

DOI: 10.2210/pdb4A7B/pdb

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2011-11-11 Released: 2011-12-21
Deposition Author(s): Hargreaves, D., Gerhardt, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.253
R-Value Work: 0.193
R-Value Observed: 0.196

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Lead Optimisation of Selective Non-Zinc Binding Inhibitors of Mmp13. Part 2.

De Savi, C., Morley, A.D., Nash, I., Karoutchi, G., Page, K., Ting, A., Gerhardt, S.

(2012) Bioorg Med Chem Lett 22: 271

PubMed: 22153941 Search on PubMed
DOI: 10.1016/j.bmcl.2011.11.034
Primary Citation of Related Structures:
4A7B

PubMed Abstract:

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
COLLAGENASE 3	A, B	169	Homo sapiens	Mutation(s): 0 Gene Names: MMP13 EC: 3.4.24
Find proteins for P45452 (Homo sapiens) Explore P45452 Go to UniProtKB: P45452
NIH Common Fund Data Resources
PHAROS: P45452 GTEx: ENSG00000137745
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 7 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
3W5 Query on 3W5 Download Ideal Coordinates CCD File SDF format, chain C [A] MOL2 format, chain C [A]	A	N-[(3S)-1,1-dioxidotetrahydro-2H-thiopyran-3-yl]-4-(4-{[(3S)-3-hydroxy-1-azabicyclo[2.2.2]oct-3-yl]ethynyl}phenoxy)benzamide C₂₇ H₃₀ N₂ O₅ S IOEYWFCDGXVEFG-HOFKKMOUSA-N		Ligand Interaction
3W4 Query on 3W4 Download Ideal Coordinates CCD File SDF format, chain K [B] MOL2 format, chain K [B]	B	N-[(3R)-1,1-dioxidotetrahydro-2H-thiopyran-3-yl]-4-(4-{[(3S)-3-hydroxy-1-azabicyclo[2.2.2]oct-3-yl]ethynyl}phenoxy)benzamide C₂₇ H₃₀ N₂ O₅ S IOEYWFCDGXVEFG-KCWPFWIISA-N		Ligand Interaction
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain E [A] SDF format, chain M [B] MOL2 format, chain E [A] MOL2 format, chain M [B]	A, B	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Ligand Interaction
HAE Query on HAE Download Ideal Coordinates CCD File SDF format, chain D [A] SDF format, chain L [B] MOL2 format, chain D [A] MOL2 format, chain L [B]	A, B	ACETOHYDROXAMIC ACID C₂ H₅ N O₂ RRUDCFGSUDOHDG-UHFFFAOYSA-N		Ligand Interaction
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain F [A] SDF format, chain H [A] SDF format, chain N [B] SDF format, chain O [B] MOL2 format, chain F [A] MOL2 format, chain H [A] MOL2 format, chain N [B] MOL2 format, chain O [B]	A, B	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Ligand Interaction
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain G [A] SDF format, chain I [A] SDF format, chain P [B] SDF format, chain Q [B] MOL2 format, chain G [A] MOL2 format, chain I [A] MOL2 format, chain P [B] MOL2 format, chain Q [B]	A, B	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Ligand Interaction
NA Query on NA Download Ideal Coordinates CCD File SDF format, chain J [A] SDF format, chain R [B] MOL2 format, chain J [A] MOL2 format, chain R [B]	A, B	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Ligand Interaction