Download MendeleyElongin-B, Elongin-C, Von Hippel-Lindau Disease Tumor Suppressor Complex
Buckley, D., Van Molle, I., Gareiss, P.C., Tae, H.S., Michel, J., Noblin, D.J., Jorgensen, W.L., Ciulli, A., Crews, C.M.To be published.
3ZUN
pVHL54-213-EloB-EloC complex_(2S,4R)-4-hydroxy-1-(2-(3-methylisoxazol- 5-yl)acetyl)-N-(4-nitrobenzyl)pyrrolidine-2-carboxamide bound
- DOI: 10.2210/pdb3ZUN/pdb
- Classification: TRANSCRIPTION
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2011-07-19 Released: 2012-07-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.302
- R-Value Work: 0.229
- R-Value Observed: 0.232
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 | A, D, G, J | 118 | Homo sapiens | Mutation(s): 0 Gene Names: ELOB, TCEB2 |  |
Find proteins for Q15370 (Homo sapiens) Explore Q15370 Go to UniProtKB: Q15370 | |||||
NIH Common Fund Data Resources | |||||
PHAROS: Q15370 GTEx: ENSG00000103363 | |||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1 | B, E, H, K | 97 | Homo sapiens | Mutation(s): 0 Gene Names: ELOC, TCEB1 |  |
Find proteins for Q15369 (Homo sapiens) Explore Q15369 Go to UniProtKB: Q15369 | |||||
NIH Common Fund Data Resources | |||||
PHAROS: Q15369 GTEx: ENSG00000154582 | |||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR | C, F, I, L | 163 | Homo sapiens | Mutation(s): 0 Gene Names: VHL |  |
Find proteins for P40337 (Homo sapiens) Explore P40337 Go to UniProtKB: P40337 | |||||
NIH Common Fund Data Resources | |||||
PHAROS: P40337 GTEx: ENSG00000134086 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZUN Query on ZUN | C, F, I, L | (4R)-N-[4-(DIHYDROXYAMINO)BENZYL]-4-HYDROXY-1-[(3-METHYLISOXAZOL-5-YL)ACETYL]-L-PROLINAMIDE C18 H22 N4 O6 WJYVXCQUWDPFNN-ZBFHGGJFSA-N |  | Ligand Interaction | |
| GOL Query on GOL | B | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.302
- R-Value Work: 0.229
- R-Value Observed: 0.232
- Space Group: P 41 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 93.404 | α = 90 |
| b = 93.404 | β = 90 |
| c = 362.891 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Deposited Date: 2011-07-19
- Released Date: 2012-07-25 Deposition Author(s): Van Molle, I., Buckley, D., Crews, C.M., Ciulli, A.
Revision History (Full details and data files)
- Version 1.0: 2012-07-25
Type: Initial release - Version 1.1: 2017-12-20
Changes: Database references, Structure summary
