Download MendeleyStructure of human DNMT1 (residues 600-1600) in complex with Sinefungin
Hashimoto, H., Cheng, X.To be published.
3SWR
Structure of human DNMT1 (601-1600) in complex with Sinefungin
- DOI: 10.2210/pdb3SWR/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2011-07-14 Released: 2011-08-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.49 Å
- R-Value Free: 0.272
- R-Value Work: 0.220
- R-Value Observed: 0.220
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA (cytosine-5)-methyltransferase 1 | A | 1002 | Homo sapiens | Mutation(s): 0 Gene Names: DNMT1, AIM, CXXC9, DNMT EC: 2.1.1.37 |  |
Find proteins for P26358 (Homo sapiens) Explore P26358 Go to UniProtKB: P26358 | |||||
NIH Common Fund Data Resources | |||||
PHAROS: P26358 GTEx: ENSG00000130816 | |||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SFG Query on SFG | A | SINEFUNGIN C15 H23 N7 O5 LMXOHSDXUQEUSF-YECHIGJVSA-N |  | Ligand Interaction | |
| MES Query on MES | A | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID C6 H13 N O4 S SXGZJKUKBWWHRA-UHFFFAOYSA-N |  | Ligand Interaction | |
| SO4 Query on SO4 | A | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| ZN Query on ZN | A | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | A | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.49 Å
- R-Value Free: 0.272
- R-Value Work: 0.220
- R-Value Observed: 0.220
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 60 | α = 90 |
| b = 110.77 | β = 90 |
| c = 201.26 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| PHASER | phasing |
| CNS | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Deposited Date: 2011-07-14
- Released Date: 2011-08-10 Deposition Author(s): Hashimoto, H., Cheng, X.
Revision History (Full details and data files)
- Version 1.0: 2011-08-10
Type: Initial release
