Macromolecule Content

Total Structure Weight: 85.90 kDa
Atom Count: 7148
Residue Count: 772
Unique protein chains: 1

3OZY

Crystal structure of enolase superfamily member from Bordetella bronchiseptica complexed with Mg and m-Xylarate

DOI: 10.2210/pdb3OZY/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Bordetella bronchiseptica
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-09-27 Released: 2011-09-28
Deposition Author(s): Fedorov, A.A., Fedorov, E.V., Wichelecki, D., Gerlt, J.A., Almo, S.C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.30 Å
R-Value Free: 0.172
R-Value Work: 0.154
R-Value Observed: 0.155

wwPDB Validation 3D Report Full Report

Literature

Crystal structure of enolase superfamily member from Bordetella bronchiseptica complexed with Mg and m-Xylarate

Fedorov, A.A., Fedorov, E.V., Wichelecki, D., Gerlt, J.A., Almo, S.C.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative mandelate racemase	A, B	389	Bordetella bronchiseptica	Mutation(s): 0 Gene Names: BB4687
Find proteins for A0A0H3LT39 (Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)) Explore A0A0H3LT39 Go to UniProtKB: A0A0H3LT39
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
DXL Query on DXL Download Ideal Coordinates CCD File SDF format, chain L [B] MOL2 format, chain L [B]	B	D-xylaric acid C₅ H₈ O₇ NPTTZSYLTYJCPR-FFEAPLRNSA-N		Ligand Interaction
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain E [A] SDF format, chain F [A] SDF format, chain M [B] SDF format, chain N [B] MOL2 format, chain E [A] MOL2 format, chain F [A] MOL2 format, chain M [B] MOL2 format, chain N [B]	A, B	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Ligand Interaction
ACY Query on ACY Download Ideal Coordinates CCD File SDF format, chain G [A] SDF format, chain H [A] SDF format, chain I [A] SDF format, chain O [B] SDF format, chain P [B] SDF format, chain Q [B] MOL2 format, chain G [A] MOL2 format, chain H [A] MOL2 format, chain I [A] MOL2 format, chain O [B] MOL2 format, chain P [B] MOL2 format, chain Q [B]	A, B	ACETIC ACID C₂ H₄ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-N		Ligand Interaction
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain C [A] SDF format, chain D [A] SDF format, chain J [B] SDF format, chain K [B] MOL2 format, chain C [A] MOL2 format, chain D [A] MOL2 format, chain J [B] MOL2 format, chain K [B]	A, B	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.30 Å
R-Value Free: 0.172
R-Value Work: 0.154
R-Value Observed: 0.155
Space Group: I 4

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 116.769	α = 90
b = 116.769	β = 90
c = 128.417	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
BALBES	phasing
PHENIX	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

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Entry History

Deposition Data

Deposited Date: 2010-09-27
Released Date: 2011-09-28

Deposition Author(s):

Revision History

Version 1.0: 2011-09-28
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.