Thrombin Inhibition
Biela, A., Sielaff, F., Heine, A., Steinmetzer, T., Klebe, G.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Thrombin Light Chain | L | 36 | Homo sapiens | Mutation(s): 0  Gene Names: F2 EC: 3.4.21.5 | ![]() |
Find proteins for P00734 (Homo sapiens) Explore P00734  Go to UniProtKB:  P00734 | |||||
NIH Common Fund Data Resources | |||||
PHAROS:  P00734 GTEx:  ENSG00000180210 | |||||
Protein Feature ViewExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Thrombin Heavy Chain | H | 259 | Homo sapiens | Mutation(s): 0  Gene Names: F2 EC: 3.4.21.5 | ![]() |
Find proteins for P00734 (Homo sapiens) Explore P00734  Go to UniProtKB:  P00734 | |||||
NIH Common Fund Data Resources | |||||
PHAROS:  P00734 GTEx:  ENSG00000180210 | |||||
Protein Feature ViewExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
S33 Query on S33 | H | (2S)-N-[[2-(aminomethyl)-5-chloranyl-phenyl]methyl]-1-[(2S)-2-[(3-chloranyl-4-methoxy-phenyl)sulfonylamino]-4-[(4-cyanophenyl)methylamino]-4-oxidanylidene-butanoyl]pyrrolidine-2-carboxamide C32 H34 Cl2 N6 O6 S MSHHPYQVXLZTQG-NSOVKSMOSA-N | Ligand Interaction | ||
NAG Query on NAG | H | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | Ligand Interaction | ||
PO4 Query on PO4 | H | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | Ligand Interaction | ||
GOL Query on GOL | H | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | Ligand Interaction | ||
NA Query on NA | H | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N | Ligand Interaction |
Modified Residues  1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
TYS Query on TYS | I | L-PEPTIDE LINKING | C9 H11 N O6 S | TYR |
Entity ID: 5 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_000887 (S33) Query on PRD_000887 | H | (2S)-N-[[2-(AMINOMETHYL)-5-CHLORANYL-PHENYL]METHYL]-1-[(2S)-2-[(3-CHLORANYL-4-METHOXY-PHENYL)SULFONYLAMINO]-4-[(4-CYANOPHENYL)METHYLAMINO]-4-OXIDANYLIDENE-BUTANOYL]PYRROLIDINE-2-CARBOXAMIDE | Peptide-like /  Thrombin inhibitor | | -- |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 69.9 | α = 90 |
b = 71.2 | β = 100.1 |
c = 72.6 | γ = 90 |
Software Name | Purpose |
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MAR345dtb | data collection |
PHASER | phasing |
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |