Download MendeleyInhibitors of Transglutaminase 2: A therapeutic option in celiac disease
Lindemann, I., Boettcher, J., Oertel, K., Weber, J., Hils, M., Pasternack, R., Heine, A., Klebe, G.To be published.
3S3S
Transglutaminase 2 in complex with a novel inhibitor
- DOI: 10.2210/pdb3S3S/pdb
- Classification: TRANSFERASE/TRANSFERASE INHIBITOR
- Organism(s): Homo sapiens, synthetic construct
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2011-05-18 Released: 2012-06-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.296
- R-Value Work: 0.227
- R-Value Observed: 0.230
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein-glutamine gamma-glutamyltransferase 2 | A | 694 | Homo sapiens | Mutation(s): 0 Gene Names: TGM2 EC: 2.3.2.13 |  |
Find proteins for P21980 (Homo sapiens) Explore P21980 Go to UniProtKB: P21980 | |||||
NIH Common Fund Data Resources | |||||
PHAROS: P21980 GTEx: ENSG00000198959 | |||||
Protein Feature ViewExpand | |||||
| |||||
- Find similar proteins by: Sequence | Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| peptide inhibitor | B | 5 | synthetic construct | Mutation(s): 0 |  |
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | A | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| XW1 Query on XW1 | B | L-PEPTIDE LINKING | C9 H17 N O4 |  | ALA |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_000937 Query on PRD_000937 | B | N-[(2R)-2-{[(benzyloxy)carbonyl]amino}-7-ethoxy-7-oxoheptanoyl]-L-valyl-L-prolyl-L-leucine | Peptide-like / Inhibitor |  | -- |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.296
- R-Value Work: 0.227
- R-Value Observed: 0.230
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 71.439 | α = 90 |
| b = 71.439 | β = 90 |
| c = 310.34 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MAR345dtb | data collection |
| PHASER | phasing |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Deposited Date: 2011-05-18
- Released Date: 2012-06-06 Deposition Author(s): Lindemann, I., Heine, A., Klebe, G.
