3RI8

Xylanase C from Aspergillus kawachii D37N mutant

PDB DOI: https://doi.org/10.2210/pdb3RI8/pdb

Classification: HYDROLASE
Organism(s): Aspergillus luchuensis
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2011-04-13 Released: 2011-10-12
Deposition Author(s): Fushinobu, S., Uno, T., Kitaoka, M., Hayashi, K., Matsuzawa, H., Wakagi, T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.228
R-Value Work: 0.168
R-Value Observed: 0.171

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Mutational analysis of fungal family 11 xylanases on pH optimum determination

Fushinobu, S., Uno, T., Kitaoka, M., Hayashi, K., Matsuzawa, H., Wakagi, T.

(2011) J Appl Glycosci (1999) 58: 107-114

DOI: https://doi.org/10.5458/jag.jag.JAG-2011_001

Macromolecule Content

Total Structure Weight: 20.02 kDa
Atom Count: 1,471
Modelled Residue Count: 182
Deposited Residue Count: 185
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Endo-1,4-beta-xylanase 3	A	185	Aspergillus luchuensis	Mutation(s): 1 Gene Names: xynC EC: 3.2.1.8
UniProt
Find proteins for P33557 (Aspergillus kawachii (strain NBRC 4308)) Explore P33557 Go to UniProtKB: P33557
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P33557
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.228
R-Value Work: 0.168
R-Value Observed: 0.171
Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.064	α = 90
b = 62.064	β = 90
c = 113.382	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
REFMAC	refinement
SCALEPACK	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-10-12

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-10-12
Type: Initial release
Version 1.1: 2023-11-01
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.