Macromolecule Content

Total Structure Weight: 71.85 kDa
Atom Count: 4544
Modelled Residue Count: 550
Deposited Residue Count: 654
Unique protein chains: 1

3KM0

17betaHSD1 in complex with 3beta-diol

DOI: 10.2210/pdb3KM0/pdb

Classification: OXIDOREDUCTASE
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2009-11-09 Released: 2010-11-10
Deposition Author(s): Mazumdar, M., Lin, S.-X.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.312
R-Value Work: 0.233
R-Value Observed: 0.237

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Molecular basis of sex-steroid translation

Mazumdar, M., Chen, J., Lin, S.-X.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Estradiol 17-beta-dehydrogenase 1	A, B	327	Homo sapiens	Mutation(s): 0 Gene Names: HSD17B1, E17KSR, EDH17B1, EDH17B2, EDHB17, SDR28C1 EC: 1.1.1.62 (PDB Primary Data), 1.1.1.51 (UniProt)
Find proteins for P14061 (Homo sapiens) Explore P14061 Go to UniProtKB: P14061
NIH Common Fund Data Resources
PHAROS: P14061 GTEx: ENSG00000108786
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAP Query on NAP Download Ideal Coordinates CCD File SDF format, chain E [E] SDF format, chain F [F] MOL2 format, chain E [E] MOL2 format, chain F [F]	E, F	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C₂₁ H₂₈ N₇ O₁₇ P₃ XJLXINKUBYWONI-NNYOXOHSSA-N		Ligand Interaction
AOM Query on AOM Download Ideal Coordinates CCD File SDF format, chain C [C] SDF format, chain D [D] MOL2 format, chain C [C] MOL2 format, chain D [D]	C, D	5-ALPHA-ANDROSTANE-3-BETA,17BETA-DIOL C₁₉ H₃₂ O₂ CBMYJHIOYJEBSB-YSZCXEEOSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.312
R-Value Work: 0.233
R-Value Observed: 0.237
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 154.42	α = 90
b = 43.12	β = 128.59
c = 121.1	γ = 90

Software Package:

Software Name	Purpose
CrystalClear	data collection
XDS	data scaling
REFMAC	refinement
XDS	data reduction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2009-11-09
Released Date: 2010-11-10

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-11-10
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.