3DMB

Crystal structure of a putative general stress family protein (xcc2264) from xanthomonas campestris pv. campestris at 2.30 A resolution

• PDB DOI: https://doi.org/10.2210/pdb3DMB/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Xanthomonas campestris pv. campestris
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-06-30 Released: 2008-08-26 
• Deposition Author(s): Joint Center for Structural Genomics (JCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.264 
• R-Value Work: 0.210 
• R-Value Observed: 0.213 

Literature

Crystal structure of a Putative General Stress Protein 26 with a PNP-Oxidase like Fold (NP_637619.1) from XANTHOMONAS CAMPESTRIS at 2.30 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D3  (Explore in 3D)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 48.43 kDa 
• Atom Count: 3,303 
• Modelled Residue Count: 425 
• Deposited Residue Count: 441 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative General Stress Protein 26 with a PNP-Oxidase like Fold	A, B, C	147	Xanthomonas campestris pv. campestris	Mutation(s): 0  Gene Names: NP_637619.1, XCC2264
UniProt
Find proteins for Q8P8H7 (Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)) Explore Q8P8H7  Go to UniProtKB:  Q8P8H7

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B, C	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.264 
• R-Value Work: 0.210 
• R-Value Observed: 0.213 
• Space Group: P 3₂ 2 1
• Diffraction Data: https://doi.org/10.18430/M33DMB

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 105.32	α = 90
b = 105.32	β = 90
c = 68.34	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
PHENIX	refinement
SHELX	phasing
MolProbity	model building
XSCALE	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
SHELXD	phasing
autoSHARP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-08-26 
Deposition Author(s): Joint Center for Structural Genomics (JCSG)

Revision History  

• Version 1.0: 2008-08-26
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.2: 2017-10-25
  Changes: Refinement description
• Version 1.3: 2019-07-24
  Changes: Data collection, Derived calculations, Refinement description
• Version 1.4: 2023-02-01
  Changes: Database references