Macromolecule Content

Total Structure Weight: 18.86 kDa
Atom Count: 1313
Residue Count: 150
Unique protein chains: 1

2ZC2

Crystal structure of DnaD-like replication protein from Streptococcus mutans UA159, gi 24377835, residues 127-199

DOI: 10.2210/pdb2ZC2/pdb

Classification: REPLICATION
Organism(s): Streptococcus mutans UA159
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-11-02 Released: 2007-12-25
Deposition Author(s): Duke, N.E.C., Clancy, S., Duggan, E., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.288
R-Value Work: 0.243
R-Value Observed: 0.246

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of DnaD-like replication protein from Streptococcus mutans UA159.

Duke, N.E.C., Clancy, S., Duggan, E., Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DnaD-like replication protein	A, B	78	Streptococcus mutans UA159	Mutation(s): 0 Gene Names: SMU_1465c
Find proteins for Q8DT97 (Streptococcus mutans serotype c (strain ATCC 700610 / UA159)) Explore Q8DT97 Go to UniProtKB: Q8DT97
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain C [A] SDF format, chain D [A] SDF format, chain E [A] SDF format, chain F [A] SDF format, chain G [B] SDF format, chain H [B] SDF format, chain I [B] SDF format, chain J [B] SDF format, chain K [B] MOL2 format, chain C [A] MOL2 format, chain D [A] MOL2 format, chain E [A] MOL2 format, chain F [A] MOL2 format, chain G [B] MOL2 format, chain H [B] MOL2 format, chain I [B] MOL2 format, chain J [B] MOL2 format, chain K [B]	A, B	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A,B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.288
R-Value Work: 0.243
R-Value Observed: 0.246
Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 81.701	α = 90
b = 81.701	β = 90
c = 52.464	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
MLPHARE	phasing
DM	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
SBC-Collect	data collection

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2007-11-02
Released Date: 2007-12-25

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History

Version 1.0: 2007-12-25
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-10-11
Changes: Refinement description

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.