2Y7S

Structure of a designed meningococcal antigen (factor H binding protein, mutant G1) inducing broad protective immunity


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.188 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Rational Design of a Meningococcal Antigen Inducing Broad Protective Immunity.

Scarselli, M.Arico, B.Brunelli, B.Savino, S.Di Marcello, F.Palumbo, E.Veggi, D.Ciucchi, L.Cartocci, E.Bottomley, M.J.Malito, E.Lo Surdo, P.Comanducci, M.Giuliani, M.M.Cantini, F.Dragonetti, S.Colaprico, A.Doro, F.Giannetti, P.Pallaoro, M.Brogioni, B.Tontini, M.Hilleringmann, M.Nardi-Dei, V.Banci, L.Pizza, M.Rappuoli, R.

(2011) Sci Transl Med 3: 91RA6

  • DOI: https://doi.org/10.1126/scitranslmed.3002234
  • Primary Citation of Related Structures:  
    2Y7S

  • PubMed Abstract: 

    The sequence variability of protective antigens is a major challenge to the development of vaccines. For Neisseria meningitidis, the bacterial pathogen that causes meningitis, the amino acid sequence of the protective antigen factor H binding protein (fHBP) has more than 300 variations. These sequence differences can be classified into three distinct groups of antigenic variants that do not induce cross-protective immunity. Our goal was to generate a single antigen that would induce immunity against all known sequence variants of N. meningitidis. To achieve this, we rationally designed, expressed, and purified 54 different mutants of fHBP and tested them in mice for the induction of protective immunity. We identified and determined the crystal structure of a lead chimeric antigen that was able to induce high levels of cross-protective antibodies in mice against all variant strains tested. The new fHBP antigen had a conserved backbone that carried an engineered surface containing specificities for all three variant groups. We demonstrate that the structure-based design of multiple immunodominant antigenic surfaces on a single protein scaffold is possible and represents an effective way to create broadly protective vaccines.


  • Organizational Affiliation

    Novartis Vaccines and Diagnostics S.r.l., Via Fiorentina 1, 53100 Siena, Italy.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
FACTOR H BINDING PROTEIN
A, B
256Neisseria meningitidis MC58Mutation(s): 22 
UniProt
Find proteins for Q9JXV4 (Neisseria meningitidis serogroup B (strain MC58))
Explore Q9JXV4 
Go to UniProtKB:  Q9JXV4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9JXV4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.188 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 47.48α = 90
b = 99.65β = 97.82
c = 58.06γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-07-27
    Type: Initial release
  • Version 1.1: 2012-11-21
    Changes: Database references, Refinement description, Source and taxonomy
  • Version 1.2: 2023-12-20
    Changes: Data collection, Database references, Other, Refinement description