2R5X

Crystal structure of uncharacterized conserved protein YugN from Geobacillus kaustophilus HTA426

• PDB DOI: https://doi.org/10.2210/pdb2R5X/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Geobacillus kaustophilus HTA426
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2007-09-04 Released: 2007-09-11 
• Deposition Author(s): Ramagopal, U.A., Patskovsky, Y., Shi, W., Toro, R., Meyer, A.J., Freeman, J., Wu, B., Koss, J., Groshong, C., Rodgers, L., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.04 Å
• R-Value Free: 0.233 
• R-Value Work: 0.198 
• R-Value Observed: 0.199 

Literature

Crystal structure of uncharacterized protein YugN from Geobacillus kaustophilus HTA426.

Ramagopal, U.A., Patskovsky, Y., Shi, W., Toro, R., Meyer, A.J., Freeman, J., Wu, B., Koss, J., Groshong, C., Rodgers, L., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 30.3 kDa 
• Atom Count: 2,140 
• Modelled Residue Count: 233 
• Deposited Residue Count: 258 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized conserved protein	A, B	129	Geobacillus kaustophilus HTA426	Mutation(s): 1  Gene Names: yugN, GK1089
UniProt
Find proteins for Q5L106 (Geobacillus kaustophilus (strain HTA426)) Explore Q5L106  Go to UniProtKB:  Q5L106

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.04 Å
• R-Value Free: 0.233 
• R-Value Work: 0.198 
• R-Value Observed: 0.199 
• Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.158	α = 90
b = 92.319	β = 90
c = 33.843	γ = 90

Software Package:

Software Name	Purpose
SHELXD	phasing
SHELXE	model building
REFMAC	refinement
ADSC	data collection
HKL-2000	data reduction
SCALEPACK	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-09-11 
Deposition Author(s): Ramagopal, U.A., Patskovsky, Y., Shi, W., Toro, R., Meyer, A.J., Freeman, J., Wu, B., Koss, J., Groshong, C., Rodgers, L., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2007-09-11
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.2: 2017-10-25
  Changes: Refinement description
• Version 1.3: 2018-11-14
  Changes: Data collection, Structure summary
• Version 1.4: 2021-02-03
  Changes: Database references, Structure summary
• Version 1.5: 2021-10-20
  Changes: Database references
• Version 1.6: 2024-02-21
  Changes: Data collection