Crystal structure of the complex of C-lobe of bovine lactoferrin with Mannitol and Mannose at 2.7 A resolution
Mir, R., Jain, R., Sinha, M., Singh, N., Sharma, S., Kaur, P., Bhushan, A., Singh, T.P.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | B | 3 | | N-Glycosylation | Oligosaccharides Interaction |
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | C | 2 | | N-Glycosylation | Oligosaccharides Interaction |
Ligands 7 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
M2P Query on M2P | A | D-MANNITOL-1,6-DIPHOSPHATE C6 H16 O12 P2 WOYYTQHMNDWRCW-KVTDHHQDSA-N | Ligand Interaction | ||
NAG Query on NAG | A | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | Ligand Interaction | ||
BMA Query on BMA | A | beta-D-mannopyranose C6 H12 O6 WQZGKKKJIJFFOK-RWOPYEJCSA-N | Ligand Interaction | ||
SO4 Query on SO4 | A | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | Ligand Interaction | ||
ZN Query on ZN | A | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | Ligand Interaction | ||
CO3 Query on CO3 | A | CARBONATE ION C O3 BVKZGUZCCUSVTD-UHFFFAOYSA-L | Ligand Interaction | ||
FE Query on FE | A | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N | Ligand Interaction |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 63.4 | α = 90 |
b = 50.3 | β = 107.8 |
c = 65.9 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
AUTOMAR | data collection |
DENZO | data reduction |
SCALEPACK | data scaling |
AMoRE | phasing |