2PJT

Crystal structure of the catalytic domain of MMP-13 complexed with WAY-344

DOI: 10.2210/pdb2PJT/pdb

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2007-04-16 Released: 2008-04-22
Deposition Author(s): Xu, Z., Huang, A., Lovering, F., Levin, J.I., Mosyak, L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.270
R-Value Work: 0.212
R-Value Observed: 0.212

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure-based design of TACE selective inhibitors: manipulations in the S1'-S3' pocket.

Huang, A., Joseph-McCarthy, D., Lovering, F., Sun, L., Wang, W., Xu, W., Zhu, Y., Cui, J., Zhang, Y., Levin, J.I.

(2007) Bioorg Med Chem 15: 6170-6181

PubMed: 17606376 Search on PubMed
DOI: 10.1016/j.bmc.2007.06.031
Primary Citation of Related Structures:
2PJT

PubMed Abstract:

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Collagenase 3	A, B, C, D	165	Homo sapiens	Mutation(s): 0 Gene Names: MMP13 EC: 3.4.24
Find proteins for P45452 (Homo sapiens) Explore P45452 Go to UniProtKB: P45452
NIH Common Fund Data Resources
PHAROS: P45452 GTEx: ENSG00000137745
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
347 Query on 347 Download Ideal Coordinates CCD File SDF format, chain J [A] SDF format, chain O [B] SDF format, chain U [C] SDF format, chain Z [D] MOL2 format, chain J [A] MOL2 format, chain O [B] MOL2 format, chain U [C] MOL2 format, chain Z [D]	A, B, C, D	TERT-BUTYL 4-({[4-(BUT-2-YN-1-YLAMINO)PHENYL]SULFONYL}METHYL)-4-[(HYDROXYAMINO)CARBONYL]PIPERIDINE-1-CARBOXYLATE C₂₂ H₃₁ N₃ O₆ S RXFCFGLSOUOCEA-UHFFFAOYSA-N		Ligand Interaction
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain E [A] SDF format, chain F [A] SDF format, chain K [B] SDF format, chain L [B] SDF format, chain P [C] SDF format, chain Q [C] SDF format, chain V [D] SDF format, chain W [D] MOL2 format, chain E [A] MOL2 format, chain F [A] MOL2 format, chain K [B] MOL2 format, chain L [B] MOL2 format, chain P [C] MOL2 format, chain Q [C] MOL2 format, chain V [D] MOL2 format, chain W [D]	A, B, C, D	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Ligand Interaction
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain G [A] SDF format, chain H [A] SDF format, chain I [A] SDF format, chain M [B] SDF format, chain N [B] SDF format, chain R [C] SDF format, chain S [C] SDF format, chain T [C] SDF format, chain X [D] SDF format, chain Y [D] MOL2 format, chain G [A] MOL2 format, chain H [A] MOL2 format, chain I [A] MOL2 format, chain M [B] MOL2 format, chain N [B] MOL2 format, chain R [C] MOL2 format, chain S [C] MOL2 format, chain T [C] MOL2 format, chain X [D] MOL2 format, chain Y [D]	A, B, C, D	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Ligand Interaction