2FGT

Crystal Structure of YycH from Bacillus subtilis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.304 
  • R-Value Work: 0.251 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

The crystal structure of YycH involved in the regulation of the essential YycFG two-component system in Bacillus subtilis reveals a novel tertiary structure.

Szurmant, H.Zhao, H.Mohan, M.A.Hoch, J.A.Varughese, K.I.

(2006) Protein Sci. 15: 929-934

  • DOI: 10.1110/ps.052064406

  • PubMed Abstract: 
  • The Bacillus subtilis YycFG two-component signal transduction system is essential for cell viability, and the YycH protein is part of the regulatory circuit that controls its activity. The crystal structure of YycH was solved by two-wavelength seleni ...

    The Bacillus subtilis YycFG two-component signal transduction system is essential for cell viability, and the YycH protein is part of the regulatory circuit that controls its activity. The crystal structure of YycH was solved by two-wavelength selenium anomalous dispersion data, and was refined using 2.3 A data to an R-factor of 25.2%. The molecule is made up of three domains, and has a novel three-dimensional structure. The N-terminal domain features a calcium binding site and the central domain contains two conserved loop regions.


    Organizational Affiliation

    Division of Cellular Biology, Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California 92037, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Two-component system yycF/yycG regulatory protein yycH
A
417Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: yycH
Find proteins for Q794W0 (Bacillus subtilis (strain 168))
Go to UniProtKB:  Q794W0
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.304 
  • R-Value Work: 0.251 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 63.578α = 90.00
b = 63.578β = 90.00
c = 192.327γ = 90.00
Software Package:
Software NamePurpose
CNSrefinement
SOLVEphasing
CCP4data scaling
SCALAdata scaling
Blu-Icedata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-04-25
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2017-10-18
    Type: Refinement description