Download MendeleyCrystal structure of JW0458 from Escherichia coli
Shimizu, K., Kunishima, N.To be published.
2DY0
Crystal structure of project JW0458 from Escherichia coli
- PDB DOI: https://doi.org/10.2210/pdb2DY0/pdb
- Classification: TRANSFERASE
- Organism(s): Escherichia coli K-12
- Mutation(s): No
- Deposited: 2006-09-04 Released: 2007-03-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.25 Å
- R-Value Free: 0.207
- R-Value Work: 0.198
- R-Value Observed: 0.198
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Adenine phosphoribosyltransferase | 190 | Escherichia coli K-12 | Mutation(s): 0 EC: 2.4.2.7 |  | |
UniProt | |||||
Find proteins for P69503 (Escherichia coli (strain K12)) Explore P69503 Go to UniProtKB: P69503 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P69503 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG Query on MG | C [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.25 Å
- R-Value Free: 0.207
- R-Value Work: 0.198
- R-Value Observed: 0.198
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 40.106 | α = 109.4 |
| b = 48.192 | β = 101.84 |
| c = 54.795 | γ = 110.56 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2007-03-04 Deposition Author(s): Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2007-03-04
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description
