Download MendeleyStructural analysis of a homolog of programmed cell death 6 protein from Leishmania major Friedlin
Robien, M.A., Hol, W.G.J., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)To be published.
1Y1X
Structural analysis of a homolog of programmed cell death 6 protein from Leishmania major Friedlin
- DOI: 10.2210/pdb1Y1X/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Leishmania major strain Friedlin
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-11-19 Released: 2004-12-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.233
- R-Value Work: 0.187
- R-Value Observed: 0.190
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Leishmania Major Homolog of Programmed Cell Death 6 Protein | A, B | 191 | Leishmania major strain Friedlin | Mutation(s): 0 Gene Names: LmjF13.1460 |  |
Find proteins for Q4QG08 (Leishmania major) Explore Q4QG08 Go to UniProtKB: Q4QG08 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | A, B | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| CA Query on CA | A, B | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.233
- R-Value Work: 0.187
- R-Value Observed: 0.190
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 86.754 | α = 90 |
| b = 92.945 | β = 90 |
| c = 52.137 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| CCP4 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Deposited Date: 2004-11-19
- Released Date: 2004-12-07 Deposition Author(s): Robien, M.A., Hol, W.G.J., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)
