1SVC

NFKB P50 HOMODIMER BOUND TO DNA

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.225 
  • R-Value Observed: 0.225 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history. 


Literature

Structure of the NF-kappa B p50 homodimer bound to DNA.

Muller, C.W., Rey, F.A., Sodeoka, M., Verdine, G.L., Harrison, S.C.

(1995) Nature 373: 311-317

  • DOI: 10.1038/373311a0
  • Primary Citation of Related Structures:  
    1SVC

  • PubMed Abstract: 

    • The structure of a large fragment of the p50 subunit of the human transcription factor NF-kappa B, bound as a homodimer to DNA, reveals that the Rel-homology region has two beta-barrel domains that grip DNA in the major groove. Both domains contact the D ...

    The structure of a large fragment of the p50 subunit of the human transcription factor NF-kappa B, bound as a homodimer to DNA, reveals that the Rel-homology region has two beta-barrel domains that grip DNA in the major groove. Both domains contact the DNA backbone. The amino-terminal specificity domain contains a recognition loop that interacts with DNA bases; the carboxy-terminal dimerization domain bears the site of I-kappa B interaction. The folds of these domains are related to immunoglobulin-like modules. The amino-terminal domain also resembles the core domain of p53.

    Organizational Affiliation: 

    Howard Hughes Medical Institute, Cambridge, Massachusetts 02138.



Macromolecules

Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
PROTEIN (NUCLEAR FACTOR KAPPA-B (NF-KB)) P365Homo sapiensMutation(s): 1 
Gene Names: NFKB1
Find proteins for P19838 (Homo sapiens)
Explore P19838 
Go to UniProtKB:  P19838
NIH Common Fund Data Resources
PHAROS:  P19838
GTEx:  ENSG00000109320
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
    • Entity ID: 1
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(*AP*GP*AP*TP*GP*GP*GP*GP*AP*AP*TP*CP*CP*CP*CP*TP*A P*GP*A)-3')D19N/A
    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 2.60 Å
    • R-Value Free: 0.286 
    • R-Value Work: 0.225 
    • R-Value Observed: 0.225 
    • Space Group: P 41 21 2
    Unit Cell:
    Length ( Å )Angle ( ˚ )
    a = 137α = 90
    b = 137β = 90
    c = 57γ = 90
    Software Package:
    Software NamePurpose
    X-PLORrefinement

    Structure Validation

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    View more in-depth experimental data

    Entry History 

    Deposition Data

    Revision History 

    • Version 1.0: 1996-06-10
      Type: Initial release
    • Version 1.1: 2008-05-22
      Changes: Version format compliance
    • Version 1.2: 2011-07-13
      Changes: Version format compliance